Uses of Class
compbio.runner.msa.Probcons

Packages that use Probcons

compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

Uses of Probcons in compbio.runner.msa

Methods in compbio.runner.msa that return Probcons

Probcons

Probcons.setInput(java.lang.String inFile)

Methods in compbio.runner.msa that return types with arguments of type Probcons

java.lang.Class<Probcons>

Probcons.getType()

Uses of Probcons in compbio.ws.server

Methods in compbio.ws.server that return types with arguments of type Probcons

Limit<Probcons>	ProbconsWS.getLimit(java.lang.String presetName)
LimitsManager<Probcons>	ProbconsWS.getLimits()
PresetManager<Probcons>	ProbconsWS.getPresets()
RunnerConfig<Probcons>	ProbconsWS.getRunnerOptions()

Method parameters in compbio.ws.server with type arguments of type Probcons

java.lang.String	ProbconsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<Probcons>> options)
java.lang.String	ProbconsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Probcons> preset)