compbio.data.sequence

Class RNAStructScoreManager

java.lang.Object

compbio.data.sequence.ScoreManager

compbio.data.sequence.RNAStructScoreManager

public class RNAStructScoreManager
extends ScoreManager

Nested Class Summary

Nested classes/interfaces inherited from class compbio.data.sequence.ScoreManager

ScoreManager.ScoreHolder

Field Summary

Fields inherited from class compbio.data.sequence.ScoreManager

seqScores, SINGLE_ENTRY_KEY

Constructor Summary

Constructors

Modifier	Constructor and Description
private	RNAStructScoreManager()
	RNAStructScoreManager(java.util.List<java.lang.String> structs, java.util.List<java.util.TreeSet<Score>> data)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object obj)
java.util.List<java.util.TreeSet<Score>>	getData()
java.util.List<java.lang.String>	getStructs()
static RNAStructScoreManager	newInstance(java.util.List<java.lang.String> structs, java.util.List<java.util.TreeSet<Score>> data)
java.lang.String	toString()

Methods inherited from class compbio.data.sequence.ScoreManager

asMap, asSet, getAnnotationForSequence, getNumberOfSeq, hashCode, newInstance, newInstanceSingleScore, newInstanceSingleSequence, writeOut

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

RNAStructScoreManager

private RNAStructScoreManager()

RNAStructScoreManager

public RNAStructScoreManager(java.util.List<java.lang.String> structs,
                             java.util.List<java.util.TreeSet<Score>> data)

Method Detail

newInstance

public static RNAStructScoreManager newInstance(java.util.List<java.lang.String> structs,
                                                java.util.List<java.util.TreeSet<Score>> data)

getStructs

public java.util.List<java.lang.String> getStructs()

getData

public java.util.List<java.util.TreeSet<Score>> getData()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class ScoreManager