public class ScoreManager
extends java.lang.Object
Modifier and Type | Class and Description |
---|---|
static class |
ScoreManager.ScoreHolder |
Modifier and Type | Field and Description |
---|---|
protected java.util.List<ScoreManager.ScoreHolder> |
seqScores |
static java.lang.String |
SINGLE_ENTRY_KEY |
Modifier | Constructor and Description |
---|---|
protected |
ScoreManager() |
private |
ScoreManager(java.util.Map<java.lang.String,java.util.Set<Score>> data) |
private |
ScoreManager(java.lang.String id,
java.util.Set<Score> data) |
Modifier and Type | Method and Description |
---|---|
java.util.Map<java.lang.String,java.util.TreeSet<Score>> |
asMap() |
java.util.Set<Score> |
asSet() |
boolean |
equals(java.lang.Object obj) |
ScoreManager.ScoreHolder |
getAnnotationForSequence(java.lang.String seqId) |
int |
getNumberOfSeq() |
int |
hashCode() |
static ScoreManager |
newInstance(java.util.Map<java.lang.String,java.util.Set<Score>> data) |
static ScoreManager |
newInstanceSingleScore(java.util.Map<java.lang.String,Score> seqScoresMap) |
static ScoreManager |
newInstanceSingleSequence(java.util.Set<Score> data) |
void |
writeOut(java.io.Writer outStream) |
public static final java.lang.String SINGLE_ENTRY_KEY
protected java.util.List<ScoreManager.ScoreHolder> seqScores
protected ScoreManager()
private ScoreManager(java.lang.String id, java.util.Set<Score> data)
private ScoreManager(java.util.Map<java.lang.String,java.util.Set<Score>> data)
public static ScoreManager newInstance(java.util.Map<java.lang.String,java.util.Set<Score>> data)
public static ScoreManager newInstanceSingleScore(java.util.Map<java.lang.String,Score> seqScoresMap)
public static ScoreManager newInstanceSingleSequence(java.util.Set<Score> data)
public java.util.Map<java.lang.String,java.util.TreeSet<Score>> asMap()
public java.util.Set<Score> asSet()
public int getNumberOfSeq()
public ScoreManager.ScoreHolder getAnnotationForSequence(java.lang.String seqId)
public void writeOut(java.io.Writer outStream) throws java.io.IOException
java.io.IOException
public int hashCode()
hashCode
in class java.lang.Object
public boolean equals(java.lang.Object obj)
equals
in class java.lang.Object