| Package | Description |
|---|---|
| compbio.metadata |
A meta-data model for multiple sequence alignment web services
Classes in this package have no dependencies to other sources in the project.
|
| Class and Description |
|---|
| Argument
An unmodifiable view for the options and parameters, with one exception - it
allows to set a value
|
| JobStatus
The status of the job.
|
| JobSubmissionException
Exception for generic problems with JobSubmission it is often thrown as a
wrapper for the lower level exceptions like IOException or DrmaaException.
|
| Limit
A value object containing a maximum number of sequences and a maximum average
sequence length for a preset.
|
| LimitExceededException
This exception is thrown if the task larger in size that the limit that
applies to the calculation.
|
| Option
Command line option/flag or multiple exclusive options with no value.
|
| Parameter
A single value containing an option supported by the web service e.g.
|
| Preset
Collection of Options and Parameters with their values
|
| PresetManager
Collection of presets and methods to manipulate them @see
Preset |
| RunnerConfig |
| ValueConstrain
The type and the lower and upper boundaries for numerical value.
|
| ValueConstrain.Type |
| WrongParameterException
WrongParameterException is thrown wherever the
RunnerConfig object
does not match the actual runnable or then attempting to set the value of
Argument to invalid value. |