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T

templateFile(String) - Static method in class PIP.Core.App
 
toArray() - Method in class PIP.Collections.Persistent.AbstractCollection
Returns an array containing all of the elements in this collection.
toArray(T[]) - Method in class PIP.Collections.Persistent.AbstractCollection
Returns an array containing all of the elements in this collection; the runtime type of the returned array is that of the specified array.
toString() - Method in class PIP.Collections.Pair
 
toString() - Method in class PIP.Collections.Persistent.AbstractCollection
Returns a string representation of this collection.
toString() - Method in class PIP.Collections.Persistent.AbstractMap
Returns a string representation of this map.
toString() - Method in class PIP.Core.Assembly
 
toString() - Method in class PIP.Core.Atom
 
toString() - Method in class PIP.Core.Chain
 
toString() - Method in class PIP.Core.Element
 
toString() - Method in class PIP.Core.Entry
 
toString() - Method in class PIP.Core.ExperimentType
 
toString() - Method in class PIP.Core.Residue
 
toString() - Method in class PIP.Core.ResidueName
 
toString() - Method in class PIP.Domains.Family.FamilyType
 
toString() - Method in class PIP.Domains.Family.HFType
 
toString() - Method in class PIP.Domains.Family.HierarchicalFamily
 
toString() - Method in class PIP.Domains.Family.Pfam
 
toString() - Method in class PIP.Domains.Interactions.InteractionSourceType
 
toString() - Method in class PIP.IO.MSD.CathReaderNew
 
toString() - Method in class PIP.IO.MSD.PfamReader
 
toString() - Method in class PIP.IO.MSD.ScopReaderNew
 
Transform - Class in PIP.IO.StampPackage
 
Transform() - Constructor for class PIP.IO.StampPackage.Transform
 
Transformations - Class in PIP.IO.StampPackage
 
Transformations() - Constructor for class PIP.IO.StampPackage.Transformations
 
transformCoordinates(double[][], double[][]) - Static method in class PIP.IO.StampPackage.IRMSDCalc
 
tryConnection() - Static method in class PIP.Core.App
 

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