A B C D E F G H I J K L M N O P Q R S T U V W

F

factorial(long) - Static method in class PIP.Core.MathUtility

Family - Interface in PIP.Domains.Family

FamilyComparator - Class in PIP.Domains.Family

FamilyComparator() - Constructor for class PIP.Domains.Family.FamilyComparator

FamilyType - Class in PIP.Domains.Family

FamilyType(Class) - Constructor for class PIP.Domains.Family.FamilyType

FixDatabases - Class in PIP.IO

FixDatabases() - Constructor for class PIP.IO.FixDatabases

forADomainInMSD(Domain, String) - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

forADomainInteractionInEntry(DomainInteraction, String, FamilyType) - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

forAllAssemblies(Closure) - Static method in class PIP.Core.Entry

forAllDomains(Closure) - Static method in class PIP.Domains.Domains

forAllEntries(Closure) - Static method in class PIP.Core.Entries

forAnAssemblyInMSD(Assembly, String) - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

forAnEntryInMSD(Entry, String) - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

forEveryAssemblyInMSD() - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

forEveryDomainInMSD() - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

FORMAT_STRING_old - Static variable in class PIP.IO.CreatePeripheralData.PDBFile

This is the format for the Hydrogen residue

FORMAT_STRING_rightJustifiedAtomName - Static variable in class PIP.IO.CreatePeripheralData.PDBFile

This is the format for all other residue types but hydrogen

FormatDBFileCreator - Class in PIP.IO.Blast

FormatDBFileCreator() - Constructor for class PIP.IO.Blast.FormatDBFileCreator

forUniqueDomainInEachFamily(Map<Family, Domain>) - Static method in class PIP.IO.CreatePeripheralData.CreatePDBFiles

fromAlignmentPositionCalculateResiduePosition(List<Character>, int) - Static method in class PIP.IO.StampPackage.Alignments

fromResiduePositionCalculateAlignmentPosition(List<Character>, int) - Static method in class PIP.IO.StampPackage.Alignments