It is important that you cite JABAWS when you use it. Citing us helps us funding the work we do and allow us to continue to improve the project further.

Peter V. Troshin, James B. Procter and Geoffrey J. Barton - Java Bioinformatics Analysis Web Services for Multiple Sequence Alignment - JABAWS:MS Bioinformatics 2011. 27 (14): 2001-2002. doi: 10.1093/bioinformatics/btr304

Peter V. Troshin, Alexander Sherstnev, James B. Procter, Daniel L. Barton, Fábio Madeira and Geoffrey J. Barton (2017) JABAWS 2.2 Distributed Web Services for Bioinformatics: Protein Disorder, Conservation and RNA Secondary Structure. Paper in preparation.