Uses of Class
compbio.engine.client.Executable.ExecProvider

Packages that use Executable.ExecProvider

Package	Description
compbio.engine
compbio.engine.client
compbio.runner.conservation
compbio.runner.disorder
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)

Uses of Executable.ExecProvider in compbio.engine

Methods in compbio.engine that return Executable.ExecProvider

Modifier and Type	Method and Description
static Executable.ExecProvider	LoadBalancer.getEngine(Executable<?> executable)
static <T,V> Executable.ExecProvider	LoadBalancer.getEngine(Executable<V> executable, java.util.List<FastaSequence> dataSet)
(package private) static Executable.ExecProvider	Configurator.getExecProvider(ConfiguredExecutable<?> executable, java.util.List<FastaSequence> dataSet) Depending on the values defined in the properties (engine.cluster.enable=true and engine.local.enable=true) return either Cluster job submission engine #JobRunner or local job submission engine #LocalRunner If both engines enabled than ask LoadBalancer for an engine.

Methods in compbio.engine with parameters of type Executable.ExecProvider

Modifier and Type	Method and Description
static <T> ConfiguredExecutable<T>	Configurator.configureExecutable(Executable<T> executable, Executable.ExecProvider provider)
static AsyncExecutor	Configurator.getAsyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider)
static SyncExecutor	Configurator.getSyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider)
(package private) static <T> void	Configurator.setupWorkDirectory(ConfExecutable<T> confExec, Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.engine.client

Fields in compbio.engine.client declared as Executable.ExecProvider

Modifier and Type	Field and Description
private Executable.ExecProvider	ConfExecutable.provider

Methods in compbio.engine.client that return Executable.ExecProvider

Modifier and Type	Method and Description
Executable.ExecProvider	ConfExecutable.getExecProvider()
Executable.ExecProvider	ConfiguredExecutable.getExecProvider()
Executable.ExecProvider	ConfExecutable.getSupportedRuntimes()
Executable.ExecProvider	ConfiguredExecutable.getSupportedRuntimes()
static Executable.ExecProvider	EngineUtil.getSupportedRuntimes(java.lang.Class<?> clazz)
static Executable.ExecProvider	Util.getSupportedRuntimes(java.lang.Class<?> clazz)
static Executable.ExecProvider	Executable.ExecProvider.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static Executable.ExecProvider[]	Executable.ExecProvider.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in compbio.engine.client with parameters of type Executable.ExecProvider

Modifier and Type	Method and Description
java.lang.String	ConfExecutable.getCommand(Executable.ExecProvider provider)
java.lang.String	ConfiguredExecutable.getCommand(Executable.ExecProvider provider)
static java.lang.String	EngineUtil.getCommand(Executable.ExecProvider provider, java.lang.Class<?> clazz)
static java.lang.String	Util.getCommand(Executable.ExecProvider provider, java.lang.Class<?> clazz)
CommandBuilder<T>	SkeletalExecutable.getParameters(Executable.ExecProvider provider)
CommandBuilder<T>	ConfExecutable.getParameters(Executable.ExecProvider provider)
CommandBuilder<T>	Executable.getParameters(Executable.ExecProvider provider)
void	ConfExecutable.setExecProvider(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner.conservation

Methods in compbio.runner.conservation with parameters of type Executable.ExecProvider

Modifier and Type	Method and Description
CommandBuilder<AACon>	AACon.getParameters(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner.disorder

Methods in compbio.runner.disorder with parameters of type Executable.ExecProvider

Modifier and Type	Method and Description
CommandBuilder<Jronn>	Jronn.getParameters(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner.msa

Methods in compbio.runner.msa with parameters of type Executable.ExecProvider

Modifier and Type	Method and Description
CommandBuilder<Tcoffee>	Tcoffee.getParameters(Executable.ExecProvider provider)
CommandBuilder<ClustalO>	ClustalO.getParameters(Executable.ExecProvider provider)