Uses of Interface
compbio.engine.client.PipedExecutable

Packages that use PipedExecutable

Package	Description
compbio.engine.client
compbio.runner.disorder
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.runner.structure

Uses of PipedExecutable in compbio.engine.client

Subinterfaces of PipedExecutable in compbio.engine.client

Modifier and Type	Interface and Description
interface	ConfiguredExecutable<T>

Classes in compbio.engine.client that implement PipedExecutable

Modifier and Type	Class and Description
class	ConfExecutable<T>

Uses of PipedExecutable in compbio.runner.disorder

Classes in compbio.runner.disorder that implement PipedExecutable

Modifier and Type	Class and Description
class	Disembl DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops fold_rem465 sequence_file print 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' This version of DisEMBL is 1.4 (latest available for download in Feb 2011) capable of outputting raw values The values of the parameters are hard coded in DisEMBL.py script.
class	GlobPlot ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' Hard-coded values are 10 15 74 4 5.

Uses of PipedExecutable in compbio.runner.msa

Classes in compbio.runner.msa that implement PipedExecutable

Modifier and Type	Class and Description
class	GLprobs
class	Mafft
class	MSAprobs
class	Probcons
class	Tcoffee

Uses of PipedExecutable in compbio.runner.structure

Classes in compbio.runner.structure that implement PipedExecutable

Modifier and Type	Class and Description
class	RNAalifold