Uses of Class
compbio.metadata.Limit

Packages that use Limit

Package	Description
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.engine.client
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.ws.client	A command line client and web services testing client for JAva Bioinformatics Analysis Web Services.
compbio.ws.server

Uses of Limit in compbio.data.msa

Methods in compbio.data.msa that return Limit

Modifier and Type	Method and Description
Limit<T>	Metadata.getLimit(java.lang.String presetName) Get a Limit for a preset.

Uses of Limit in compbio.data.msa.jaxws

Fields in compbio.data.msa.jaxws declared as Limit

Modifier and Type	Field and Description
private Limit	GetLimitResponse._return

Methods in compbio.data.msa.jaxws that return Limit

Modifier and Type	Method and Description
Limit	GetLimitResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type Limit

Modifier and Type	Method and Description
void	GetLimitResponse.setReturn(Limit _return)

Uses of Limit in compbio.engine.client

Methods in compbio.engine.client that return Limit

Modifier and Type	Method and Description
Limit<T>	SkeletalExecutable.getLimit(java.lang.String presetName)
Limit<T>	ConfExecutable.getLimit(java.lang.String presetName)
Limit<T>	Executable.getLimit(java.lang.String presetName)

Uses of Limit in compbio.metadata

Fields in compbio.metadata with type parameters of type Limit

Modifier and Type	Field and Description
(package private) java.util.List<Limit<T>>	LimitsManager.limit

Methods in compbio.metadata that return Limit

Modifier and Type	Method and Description
Limit<T>	LimitsManager.getDefaultLimit()
Limit<T>	LimitsManager.getLimitByName(java.lang.String presetName)

Methods in compbio.metadata that return types with arguments of type Limit

Modifier and Type	Method and Description
java.util.List<Limit<T>>	LimitsManager.getLimits()

Methods in compbio.metadata with parameters of type Limit

Modifier and Type	Method and Description
static LimitExceededException	LimitExceededException.newLimitExceeded(Limit<?> limit, java.util.List<FastaSequence> seqs)

Uses of Limit in compbio.ws.client

Methods in compbio.ws.client that return types with arguments of type Limit

Modifier and Type	Method and Description
(package private) static <T> java.util.List<Limit<T>>	MetadataHelper.getLimits(Metadata<T> msaws) Returns a list of limits supported by web service Each limit correspond to a particular preset.

Uses of Limit in compbio.ws.server

Methods in compbio.ws.server that return Limit

Modifier and Type	Method and Description
Limit<T>	GenericMetadataService.getLimit(java.lang.String presetName)
Limit<GLprobs>	GLprobsWS.getLimit(java.lang.String presetName)
Limit<Mafft>	MafftWS.getLimit(java.lang.String presetName)
Limit<ClustalO>	ClustalOWS.getLimit(java.lang.String presetName)
Limit<MSAprobs>	MSAprobsWS.getLimit(java.lang.String presetName)
Limit<Muscle>	MuscleWS.getLimit(java.lang.String presetName)
Limit<ClustalW>	ClustalWS.getLimit(java.lang.String presetName)
Limit<Tcoffee>	TcoffeeWS.getLimit(java.lang.String presetName)
Limit<Probcons>	ProbconsWS.getLimit(java.lang.String presetName)

Methods in compbio.ws.server with parameters of type Limit

Modifier and Type	Method and Description
static <T> java.lang.String	WSUtil.align(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger logger, java.lang.String callingMethod, Limit<T> limit)
static <T> java.lang.String	WSUtil.analize(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger log, java.lang.String method, Limit<T> limit)
static <T> java.lang.String	WSUtil.fold(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger log, java.lang.String method, Limit<T> limit)