A Protein Secondary Structure Prediction Server
Format examples: Raw | FASTA | MSF | BLC | Batch
Raw Format Example
Copy the content of the block below to use as an example (also available as a separate file: link)
MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC
Back to the top of the page...
FASTA Format Example
Copy the content of the block below to use as an example (also available as a separate file: link)
>0_1a apaFS---ASGASDGQSVSVSVAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFTVRKSYAGQ TPSGTPVGSVDCATDACNLGAGNSGLNLGHVALTFG >1_MA APGVTVTPATGLSNGQTVTVSATTPGTVYHVGQCAVVEGVIGCDATTSTDVTADAAGKITAQLKVHSSFQAV VANGTPWGTVNCKVVSCSAGLGSDSGEGAAQAITFA >2_KE SAAVSVSPATGLADGATVTVSASATSTSATALQCAILAGRGACNVAEFHDFSLSG-GEGTTSVVVRRSFTGY VPDGPEVGAVDCDTAPCEIVVGGNTGEYGNAAISFG >3_NC APTATVTPSSGLSDGTVVKVAGAQAGTAYDVGQCAWVDGVLACNPADFSSVTADANGSASTSLTVRRSFEGF LFDGTRWGTVDCTTAACQVGLSDAAGNGPGVAISFN
Back to the top of the page...
MSF Format Example
Copy the content of the block below to use as an example (also available as a separate file: link)
/tmp/filelPdICy MSF: 108 Type: N January 01, 1776 12:00 Check: 2741 ..
Name: 0_1a Len: 108 Check: 4063 Weight: 1.00
Name: 1_MA Len: 108 Check: 4875 Weight: 1.00
Name: 2_KE Len: 108 Check: 449 Weight: 1.00
Name: 3_NC Len: 108 Check: 3354 Weight: 1.00
//
0_1a APAFSVSPAS GASDGQSVSV SVAAAGETYY IAQCAPVGGQ DACNPATATS
1_MA APGVTVTPAT GLSNGQTVTV SATTPGTVYH VGQCAVVEGV IGCDATTSTD
2_KE SAAVSVSPAT GLADGATVTV SASATSTSAT ALQCAILAGR GACNVAEFHD
3_NC APTATVTPSS GLSDGTVVKV AGAQAGTAYD VGQCAWVDGV LACNPADFSS
0_1a FTTDASGAAS FSFTVRKSYA GQTPSGTPVG SVDCATDACN LGAGNSGLNL
1_MA VTADAAGKIT AQLKVHSSFQ AVVANGTPWG TVNCKVVSCS AGLGSDSGEG
2_KE FSLSG.GEGT TSVVVRRSFT GYVPDGPEVG AVDCDTAPCE IVVGGNTGEY
3_NC VTADANGSAS TSLTVRRSFE GFLFDGTRWG TVDCTTAACQ VGLSDAAGNG
0_1a GHVALTFG
1_MA AAQAITFA
2_KE GNAAISFG
3_NC PGVAISFN
Back to the top of the page...
BLC Format Example
Copy the content of the block below to use as an example (also available as a separate file: link)
>0_1a Name >1_MA Name >2_KE Name >3_NC Name * iteration 1 AASA PPAP AGAT FVVA STST VVVV STST PPPP AAAS STTS GGGG ALLL SSAS DNDD GGGG QQAT STTV VVVV STTK VVVV SSSA VAAG ATSA ATAQ APTA GGSG ETTT TVSA YYAY YHTD IVAV AGLG QQQQ CCCC AAAA PVIW VVLV GEAD GGGG QVRV DIGL AGAA CCCC NDNN PAVP ATAA TTED ASFF TTHS SDDS FVFV TTST TALA DDSD AAGA SA N GGGG AKES AIGA STTS FATT SQSS FLVL TKVT VVVV RHRR KSRR SSSS YFFF AQTE GAGG QVYF TVVL PAPF SNDD GGGG TTPT PPER VWVW GGGG STAT VVVV DNDD CCCC AKDT TVTT DVAA ASPA CCCC NSEQ LAIV GGVG ALVL GGGS NSGD SDNA GSTA LGGG NEEN LGYG GAGP HANG VQAV AAAA LIII TTSS FFFF GAGN *
Back to the top of the page...
Batch Format Example (Note: batch submission has to be in FASTA format)
Copy the content of the block below to use as an example (also available as a separate file: link)
>my_seq1 MKFLVLLFNILCLFPILGADELVMSPIPTTDVQPKVTFDINSEVSSGPLYLNPVEMAGVK YLQLQRQPGVQVHKVVEGDIVIWENEEMPLYTCAIVTQNEVPYMAYVELLEDPDLIFFLK EGDQWAPIPEDQYLARLQQLRQQIHTESFFSLNLSFQHENYKYEMVSSFQHSIKMVVFTP KNGHICKMVYDKNIRIFKALYNEYVTSVIGFFRGLKLLLLNIFVIDDRGMIGNKYFQLLD DKYAPISVQGYVATIPKLKDFAEPYHPIILDISDIDYVNFYLGDATYHDPGFKIVPKTPQ CITKVVDGNEVIYESSNPSVECVYKVTYYDKKNESMLRLDLNHSPPSYTSYYAKREGVWV TSTYIDLEEKIEELQDHRSTELDVMFMSDKDLNVVPLTNGNLEYFMVTPKPHRDIIIVFD GSEVLWYYEGLENHLVCTWIYVTEGAPRLVHLRVKDRIPQNTDIYMVKFGEYWVRISKTQ >my_seq2 MASVKSSSSSSSSSFISLLLLILLVIVLQSQVIECQPQQSCTASLTGLNVCAPFLVPGSP TASTECCNAVQSINHDCMCNTMRIAAQIPAQCNLPPLSCSAN >my_seq3 MEKKSIAGLCFLFLVLFVAQEVVVQSEAKTCENLVDTYRGPCFTTGSCDDHCKNKEHLLS GRCRDDVRCWCTRNC
