JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:26 4.9KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ad2a_.name2015-04-17 15:17 0 Job name flag file
[ ]jp_9_Ve8d2.align2015-04-17 15:25 154KPSIBLAST alignment in FASTA format
[TXT]jp_9_Ve8d2.als2015-04-17 15:25 3.7KAlscript command file for PS/PDF output
[ ]jp_9_Ve8d2.blast.gz2015-04-17 15:25 2.9MCompressed PSIBLAST output file
[TXT]jp_9_Ve8d2.coils.csv2015-04-17 15:25 1.3KCOILS output in CSV format
[ ]jp_9_Ve8d2.coilseq.lupas_142015-04-17 15:25 9.4KCOILS output, window length 14
[ ]jp_9_Ve8d2.coilseq.lupas_212015-04-17 15:25 9.4KCOILS output, window length 21
[ ]jp_9_Ve8d2.coilseq.lupas_282015-04-17 15:25 9.4KCOILS output, window length 28
[ ]jp_9_Ve8d2.concise2015-04-17 15:25 306KPrediction: coiled-coil, solvent, alignment
[ ]jp_9_Ve8d2.concise.blc2015-04-17 15:25 155KBLC format prediction and alignment data
[ ]jp_9_Ve8d2.concise.fasta2015-04-17 15:25 156KPrediction: coiled-coil, solvent, alignment
[ ]jp_9_Ve8d2.concise.pdf2015-04-17 15:25 2.2KPDF prediction and alignment data
[ ]jp_9_Ve8d2.concise.ps2015-04-17 15:25 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_9_Ve8d2.fasta2015-04-17 15:17 240 Input query sequence in FASTA format
[ ]jp_9_Ve8d2.full_MSA.fasta2015-04-17 15:25 5.6MFull MSA before JPred filters in FASTA
[TXT]jp_9_Ve8d2.full_MSA.fasta.noGaps.html2015-04-17 15:25 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_9_Ve8d2.full_MSA.fasta.withGaps.html2015-04-17 15:25 21MFull MSA before JPred filters in FASTA
[ ]jp_9_Ve8d2.hmm2015-04-17 15:25 42KHHMer2 profile of the alignment
[TXT]jp_9_Ve8d2.html2015-04-17 15:25 297KHTML prediction and alignment data
[ ]jp_9_Ve8d2.input2015-04-17 15:17 231 Raw input data for analysis
[ ]jp_9_Ve8d2.jalview2015-04-17 15:25 5.3KJalview annotation file for alignment
[ ]jp_9_Ve8d2.jnet2015-04-17 15:25 8.2KJnet secondary structure output
[TXT]jp_9_Ve8d2.profile2015-04-17 15:23 36KPSIBLAST profile from alignment
[ ]jp_9_Ve8d2.pssm2015-04-17 15:25 48KPSIBLAST PSSM for Jnet
[TXT]jp_9_Ve8d2.results.html2016-02-15 12:16 100KJPred results page
[TXT]jp_9_Ve8d2.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_9_Ve8d2.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_9_Ve8d2.seq2015-04-17 15:17 240 Sequence data file
[TXT]jp_9_Ve8d2.simple.html2015-04-17 15:25 1.7KBrief HTML: sequence and prediction only
[TXT]jp_9_Ve8d2.svg.html2015-04-17 15:26 92KJalview SVG summary of results
[ ]jp_9_Ve8d2.tar.gz2015-04-17 15:26 5.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.