JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:14 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1bx7a_.name2015-04-17 17:08 0 Job name flag file
[ ]jp_5UPSETE.align2015-04-17 18:14 266 PSIBLAST alignment in FASTA format
[TXT]jp_5UPSETE.als2015-04-17 18:14 1.6KAlscript command file for PS/PDF output
[ ]jp_5UPSETE.blast.gz2015-04-17 18:14 1.8KCompressed PSIBLAST output file
[TXT]jp_5UPSETE.coils.csv2015-04-17 18:14 336 COILS output in CSV format
[ ]jp_5UPSETE.coilseq.lupas_142015-04-17 18:14 2.1KCOILS output, window length 14
[ ]jp_5UPSETE.coilseq.lupas_212015-04-17 18:14 2.1KCOILS output, window length 21
[ ]jp_5UPSETE.coilseq.lupas_282015-04-17 18:14 2.1KCOILS output, window length 28
[ ]jp_5UPSETE.concise2015-04-17 18:14 2.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_5UPSETE.concise.blc2015-04-17 18:14 1.1KBLC format prediction and alignment data
[ ]jp_5UPSETE.concise.fasta2015-04-17 18:14 886 Prediction: coiled-coil, solvent, alignment
[ ]jp_5UPSETE.concise.pdf2015-04-17 18:14 7.0KPDF prediction and alignment data
[ ]jp_5UPSETE.concise.ps2015-04-17 18:14 102KPrediction: coiled-coil, solvent, alignment
[ ]jp_5UPSETE.fasta2015-04-17 18:11 64 Input query sequence in FASTA format
[ ]jp_5UPSETE.full_MSA.fasta2015-04-17 18:14 404 Full MSA before JPred filters in FASTA
[TXT]jp_5UPSETE.full_MSA.fasta.noGaps.html2015-04-17 18:14 1.2KFull MSA before JPred filters in FASTA
[TXT]jp_5UPSETE.full_MSA.fasta.withGaps.html2015-04-17 18:14 1.2KFull MSA before JPred filters in FASTA
[ ]jp_5UPSETE.hmm2015-04-17 18:14 9.6KHHMer2 profile of the alignment
[TXT]jp_5UPSETE.html2015-04-17 18:14 5.7KHTML prediction and alignment data
[ ]jp_5UPSETE.input2015-04-17 17:08 58 Raw input data for analysis
[ ]jp_5UPSETE.jalview2015-04-17 18:14 1.8KJalview annotation file for alignment
[ ]jp_5UPSETE.jnet2015-04-17 18:14 2.0KJnet secondary structure output
[TXT]jp_5UPSETE.profile2015-04-17 18:13 8.6KPSIBLAST profile from alignment
[ ]jp_5UPSETE.pssm2015-04-17 18:14 11KPSIBLAST PSSM for Jnet
[TXT]jp_5UPSETE.results.html2016-02-15 12:16 30KJPred results page
[TXT]jp_5UPSETE.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_5UPSETE.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_5UPSETE.seq2015-04-17 17:08 64 Sequence data file
[TXT]jp_5UPSETE.simple.html2015-04-17 18:14 1.0KBrief HTML: sequence and prediction only
[TXT]jp_5UPSETE.svg.html2015-04-17 18:14 22KJalview SVG summary of results
[ ]jp_5UPSETE.tar.gz2015-04-17 18:14 25KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.