JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:26 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1cxqa_.name2015-04-17 18:23 0 Job name flag file
[ ]jp_uO9F8Iw.align2015-04-17 20:25 115KPSIBLAST alignment in FASTA format
[TXT]jp_uO9F8Iw.als2015-04-17 20:25 2.3KAlscript command file for PS/PDF output
[ ]jp_uO9F8Iw.blast.gz2015-04-17 20:24 6.3MCompressed PSIBLAST output file
[TXT]jp_uO9F8Iw.coils.csv2015-04-17 20:25 888 COILS output in CSV format
[ ]jp_uO9F8Iw.coilseq.lupas_142015-04-17 20:25 6.0KCOILS output, window length 14
[ ]jp_uO9F8Iw.coilseq.lupas_212015-04-17 20:25 6.0KCOILS output, window length 21
[ ]jp_uO9F8Iw.coilseq.lupas_282015-04-17 20:25 6.0KCOILS output, window length 28
[ ]jp_uO9F8Iw.concise2015-04-17 20:25 226KPrediction: coiled-coil, solvent, alignment
[ ]jp_uO9F8Iw.concise.blc2015-04-17 20:25 116KBLC format prediction and alignment data
[ ]jp_uO9F8Iw.concise.fasta2015-04-17 20:25 116KPrediction: coiled-coil, solvent, alignment
[ ]jp_uO9F8Iw.concise.pdf2015-04-17 20:26 783KPDF prediction and alignment data
[ ]jp_uO9F8Iw.concise.ps2015-04-17 20:25 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_uO9F8Iw.fasta2015-04-17 20:14 157 Input query sequence in FASTA format
[ ]jp_uO9F8Iw.full_MSA.fasta2015-04-17 20:25 13MFull MSA before JPred filters in FASTA
[TXT]jp_uO9F8Iw.full_MSA.fasta.noGaps.html2015-04-17 20:26 2.5MFull MSA before JPred filters in FASTA
[TXT]jp_uO9F8Iw.full_MSA.fasta.withGaps.html2015-04-17 20:26 44MFull MSA before JPred filters in FASTA
[ ]jp_uO9F8Iw.hmm2015-04-17 20:25 27KHHMer2 profile of the alignment
[TXT]jp_uO9F8Iw.html2015-04-17 20:25 268KHTML prediction and alignment data
[ ]jp_uO9F8Iw.input2015-04-17 18:23 150 Raw input data for analysis
[ ]jp_uO9F8Iw.jalview2015-04-17 20:25 3.7KJalview annotation file for alignment
[ ]jp_uO9F8Iw.jnet2015-04-17 20:25 5.3KJnet secondary structure output
[TXT]jp_uO9F8Iw.profile2015-04-17 20:20 23KPSIBLAST profile from alignment
[ ]jp_uO9F8Iw.pssm2015-04-17 20:25 31KPSIBLAST PSSM for Jnet
[TXT]jp_uO9F8Iw.results.html2016-02-15 12:16 66KJPred results page
[TXT]jp_uO9F8Iw.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_uO9F8Iw.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_uO9F8Iw.seq2015-04-17 18:23 157 Sequence data file
[TXT]jp_uO9F8Iw.simple.html2015-04-17 20:25 1.3KBrief HTML: sequence and prediction only
[TXT]jp_uO9F8Iw.svg.html2015-04-17 20:26 58KJalview SVG summary of results
[ ]jp_uO9F8Iw.tar.gz2015-04-17 20:26 12MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.