JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:47 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1dj0a_.name2015-04-17 15:56 0 Job name flag file
[ ]jp_0osYxRi.align2015-04-17 16:45 260KPSIBLAST alignment in FASTA format
[TXT]jp_0osYxRi.als2015-04-17 16:45 3.5KAlscript command file for PS/PDF output
[ ]jp_0osYxRi.blast.gz2015-04-17 16:42 14MCompressed PSIBLAST output file
[TXT]jp_0osYxRi.coils.csv2015-04-17 16:45 1.6KCOILS output in CSV format
[ ]jp_0osYxRi.coilseq.lupas_142015-04-17 16:45 11KCOILS output, window length 14
[ ]jp_0osYxRi.coilseq.lupas_212015-04-17 16:45 11KCOILS output, window length 21
[ ]jp_0osYxRi.coilseq.lupas_282015-04-17 16:45 11KCOILS output, window length 28
[ ]jp_0osYxRi.concise2015-04-17 16:45 516KPrediction: coiled-coil, solvent, alignment
[ ]jp_0osYxRi.concise.blc2015-04-17 16:45 261KBLC format prediction and alignment data
[ ]jp_0osYxRi.concise.fasta2015-04-17 16:45 263KPrediction: coiled-coil, solvent, alignment
[ ]jp_0osYxRi.concise.pdf2015-04-17 16:46 1.8MPDF prediction and alignment data
[ ]jp_0osYxRi.concise.ps2015-04-17 16:45 32MPrediction: coiled-coil, solvent, alignment
[ ]jp_0osYxRi.fasta2015-04-17 16:14 280 Input query sequence in FASTA format
[ ]jp_0osYxRi.full_MSA.fasta2015-04-17 16:44 31MFull MSA before JPred filters in FASTA
[TXT]jp_0osYxRi.full_MSA.fasta.noGaps.html2015-04-17 16:47 2.2MFull MSA before JPred filters in FASTA
[TXT]jp_0osYxRi.full_MSA.fasta.withGaps.html2015-04-17 16:47 63MFull MSA before JPred filters in FASTA
[ ]jp_0osYxRi.hmm2015-04-17 16:45 50KHHMer2 profile of the alignment
[TXT]jp_0osYxRi.html2015-04-17 16:45 461KHTML prediction and alignment data
[ ]jp_0osYxRi.input2015-04-17 15:56 271 Raw input data for analysis
[ ]jp_0osYxRi.jalview2015-04-17 16:45 6.1KJalview annotation file for alignment
[ ]jp_0osYxRi.jnet2015-04-17 16:45 9.7KJnet secondary structure output
[TXT]jp_0osYxRi.profile2015-04-17 16:38 42KPSIBLAST profile from alignment
[ ]jp_0osYxRi.pssm2015-04-17 16:45 57KPSIBLAST PSSM for Jnet
[TXT]jp_0osYxRi.results.html2016-02-15 12:16 113KJPred results page
[TXT]jp_0osYxRi.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_0osYxRi.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_0osYxRi.seq2015-04-17 15:56 280 Sequence data file
[TXT]jp_0osYxRi.simple.html2015-04-17 16:45 1.7KBrief HTML: sequence and prediction only
[TXT]jp_0osYxRi.svg.html2015-04-17 16:47 105KJalview SVG summary of results
[ ]jp_0osYxRi.tar.gz2015-04-17 16:47 22MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.