JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:15 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1dvoa_.name2015-04-17 18:59 0 Job name flag file
[ ]jp_5D7XvRT.align2015-04-17 21:15 69KPSIBLAST alignment in FASTA format
[TXT]jp_5D7XvRT.als2015-04-17 21:15 2.4KAlscript command file for PS/PDF output
[ ]jp_5D7XvRT.blast.gz2015-04-17 21:15 206KCompressed PSIBLAST output file
[TXT]jp_5D7XvRT.coils.csv2015-04-17 21:15 942 COILS output in CSV format
[ ]jp_5D7XvRT.coilseq.lupas_142015-04-17 21:15 6.4KCOILS output, window length 14
[ ]jp_5D7XvRT.coilseq.lupas_212015-04-17 21:15 6.4KCOILS output, window length 21
[ ]jp_5D7XvRT.coilseq.lupas_282015-04-17 21:15 6.4KCOILS output, window length 28
[ ]jp_5D7XvRT.concise2015-04-17 21:15 138KPrediction: coiled-coil, solvent, alignment
[ ]jp_5D7XvRT.concise.blc2015-04-17 21:15 70KBLC format prediction and alignment data
[ ]jp_5D7XvRT.concise.fasta2015-04-17 21:15 70KPrediction: coiled-coil, solvent, alignment
[ ]jp_5D7XvRT.concise.pdf2015-04-17 21:15 424KPDF prediction and alignment data
[ ]jp_5D7XvRT.concise.ps2015-04-17 21:15 7.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_5D7XvRT.fasta2015-04-17 21:11 167 Input query sequence in FASTA format
[ ]jp_5D7XvRT.full_MSA.fasta2015-04-17 21:15 382KFull MSA before JPred filters in FASTA
[TXT]jp_5D7XvRT.full_MSA.fasta.noGaps.html2015-04-17 21:15 194KFull MSA before JPred filters in FASTA
[TXT]jp_5D7XvRT.full_MSA.fasta.withGaps.html2015-04-17 21:15 1.6MFull MSA before JPred filters in FASTA
[ ]jp_5D7XvRT.hmm2015-04-17 21:15 29KHHMer2 profile of the alignment
[TXT]jp_5D7XvRT.html2015-04-17 21:15 160KHTML prediction and alignment data
[ ]jp_5D7XvRT.input2015-04-17 18:59 159 Raw input data for analysis
[ ]jp_5D7XvRT.jalview2015-04-17 21:15 3.9KJalview annotation file for alignment
[ ]jp_5D7XvRT.jnet2015-04-17 21:15 5.6KJnet secondary structure output
[TXT]jp_5D7XvRT.profile2015-04-17 21:14 25KPSIBLAST profile from alignment
[ ]jp_5D7XvRT.pssm2015-04-17 21:15 33KPSIBLAST PSSM for Jnet
[TXT]jp_5D7XvRT.results.html2016-02-15 12:16 70KJPred results page
[TXT]jp_5D7XvRT.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_5D7XvRT.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_5D7XvRT.seq2015-04-17 18:59 167 Sequence data file
[TXT]jp_5D7XvRT.simple.html2015-04-17 21:15 1.4KBrief HTML: sequence and prediction only
[TXT]jp_5D7XvRT.svg.html2015-04-17 21:15 62KJalview SVG summary of results
[ ]jp_5D7XvRT.tar.gz2015-04-17 21:15 892KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.