JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:34 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1e44b_.name2015-04-17 15:18 0 Job name flag file
[ ]jp_M6rhePe.align2015-04-17 15:34 11KPSIBLAST alignment in FASTA format
[TXT]jp_M6rhePe.als2015-04-17 15:34 1.8KAlscript command file for PS/PDF output
[ ]jp_M6rhePe.blast.gz2015-04-17 15:34 32KCompressed PSIBLAST output file
[TXT]jp_M6rhePe.coils.csv2015-04-17 15:34 606 COILS output in CSV format
[ ]jp_M6rhePe.coilseq.lupas_142015-04-17 15:34 4.0KCOILS output, window length 14
[ ]jp_M6rhePe.coilseq.lupas_212015-04-17 15:34 4.0KCOILS output, window length 21
[ ]jp_M6rhePe.coilseq.lupas_282015-04-17 15:34 4.0KCOILS output, window length 28
[ ]jp_M6rhePe.concise2015-04-17 15:34 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_M6rhePe.concise.blc2015-04-17 15:34 13KBLC format prediction and alignment data
[ ]jp_M6rhePe.concise.fasta2015-04-17 15:34 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_M6rhePe.concise.pdf2015-04-17 15:34 70KPDF prediction and alignment data
[ ]jp_M6rhePe.concise.ps2015-04-17 15:34 1.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_M6rhePe.fasta2015-04-17 15:18 110 Input query sequence in FASTA format
[ ]jp_M6rhePe.full_MSA.fasta2015-04-17 15:34 34KFull MSA before JPred filters in FASTA
[TXT]jp_M6rhePe.full_MSA.fasta.noGaps.html2015-04-17 15:34 40KFull MSA before JPred filters in FASTA
[TXT]jp_M6rhePe.full_MSA.fasta.withGaps.html2015-04-17 15:34 159KFull MSA before JPred filters in FASTA
[ ]jp_M6rhePe.hmm2015-04-17 15:34 18KHHMer2 profile of the alignment
[TXT]jp_M6rhePe.html2015-04-17 15:34 37KHTML prediction and alignment data
[ ]jp_M6rhePe.input2015-04-17 15:18 103 Raw input data for analysis
[ ]jp_M6rhePe.jalview2015-04-17 15:34 2.7KJalview annotation file for alignment
[ ]jp_M6rhePe.jnet2015-04-17 15:34 3.6KJnet secondary structure output
[TXT]jp_M6rhePe.profile2015-04-17 15:33 16KPSIBLAST profile from alignment
[ ]jp_M6rhePe.pssm2015-04-17 15:34 21KPSIBLAST PSSM for Jnet
[TXT]jp_M6rhePe.results.html2016-02-15 12:16 46KJPred results page
[TXT]jp_M6rhePe.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_M6rhePe.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_M6rhePe.seq2015-04-17 15:18 110 Sequence data file
[TXT]jp_M6rhePe.simple.html2015-04-17 15:34 1.1KBrief HTML: sequence and prediction only
[TXT]jp_M6rhePe.svg.html2015-04-17 15:34 38KJalview SVG summary of results
[ ]jp_M6rhePe.tar.gz2015-04-17 15:34 159KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.