JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:53 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1f5na1.name2015-04-17 15:22 0 Job name flag file
[ ]jp_xBsc1ju.align2015-04-17 15:53 143KPSIBLAST alignment in FASTA format
[TXT]jp_xBsc1ju.als2015-04-17 15:53 2.1KAlscript command file for PS/PDF output
[ ]jp_xBsc1ju.blast.gz2015-04-17 15:52 713KCompressed PSIBLAST output file
[TXT]jp_xBsc1ju.coils.csv2015-04-17 15:53 1.8KCOILS output in CSV format
[ ]jp_xBsc1ju.coilseq.lupas_142015-04-17 15:53 13KCOILS output, window length 14
[ ]jp_xBsc1ju.coilseq.lupas_212015-04-17 15:53 13KCOILS output, window length 21
[ ]jp_xBsc1ju.coilseq.lupas_282015-04-17 15:53 13KCOILS output, window length 28
[ ]jp_xBsc1ju.concise2015-04-17 15:53 290KPrediction: coiled-coil, solvent, alignment
[ ]jp_xBsc1ju.concise.blc2015-04-17 15:53 146KBLC format prediction and alignment data
[ ]jp_xBsc1ju.concise.fasta2015-04-17 15:53 147KPrediction: coiled-coil, solvent, alignment
[ ]jp_xBsc1ju.concise.pdf2015-04-17 15:53 888KPDF prediction and alignment data
[ ]jp_xBsc1ju.concise.ps2015-04-17 15:53 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_xBsc1ju.fasta2015-04-17 15:22 317 Input query sequence in FASTA format
[ ]jp_xBsc1ju.full_MSA.fasta2015-04-17 15:52 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_xBsc1ju.full_MSA.fasta.noGaps.html2015-04-17 15:53 435KFull MSA before JPred filters in FASTA
[TXT]jp_xBsc1ju.full_MSA.fasta.withGaps.html2015-04-17 15:53 5.2MFull MSA before JPred filters in FASTA
[ ]jp_xBsc1ju.hmm2015-04-17 15:53 56KHHMer2 profile of the alignment
[TXT]jp_xBsc1ju.html2015-04-17 15:53 264KHTML prediction and alignment data
[ ]jp_xBsc1ju.input2015-04-17 15:22 307 Raw input data for analysis
[ ]jp_xBsc1ju.jalview2015-04-17 15:53 7.1KJalview annotation file for alignment
[ ]jp_xBsc1ju.jnet2015-04-17 15:53 11KJnet secondary structure output
[TXT]jp_xBsc1ju.profile2015-04-17 15:50 48KPSIBLAST profile from alignment
[ ]jp_xBsc1ju.pssm2015-04-17 15:53 64KPSIBLAST PSSM for Jnet
[TXT]jp_xBsc1ju.results.html2016-02-15 12:16 120KJPred results page
[TXT]jp_xBsc1ju.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_xBsc1ju.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_xBsc1ju.seq2015-04-17 15:22 317 Sequence data file
[TXT]jp_xBsc1ju.simple.html2015-04-17 15:53 1.6KBrief HTML: sequence and prediction only
[TXT]jp_xBsc1ju.svg.html2015-04-17 15:53 112KJalview SVG summary of results
[ ]jp_xBsc1ju.tar.gz2015-04-17 15:53 2.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.