JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:31 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ftra1.name2015-04-17 15:26 0 Job name flag file
[ ]jp_BH7n2JY.align2015-04-17 15:30 24KPSIBLAST alignment in FASTA format
[TXT]jp_BH7n2JY.als2015-04-17 15:30 2.9KAlscript command file for PS/PDF output
[ ]jp_BH7n2JY.blast.gz2015-04-17 15:30 69KCompressed PSIBLAST output file
[TXT]jp_BH7n2JY.coils.csv2015-04-17 15:30 918 COILS output in CSV format
[ ]jp_BH7n2JY.coilseq.lupas_142015-04-17 15:30 6.2KCOILS output, window length 14
[ ]jp_BH7n2JY.coilseq.lupas_212015-04-17 15:30 6.2KCOILS output, window length 21
[ ]jp_BH7n2JY.coilseq.lupas_282015-04-17 15:30 6.2KCOILS output, window length 28
[ ]jp_BH7n2JY.concise2015-04-17 15:30 51KPrediction: coiled-coil, solvent, alignment
[ ]jp_BH7n2JY.concise.blc2015-04-17 15:30 25KBLC format prediction and alignment data
[ ]jp_BH7n2JY.concise.fasta2015-04-17 15:30 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_BH7n2JY.concise.pdf2015-04-17 15:30 154KPDF prediction and alignment data
[ ]jp_BH7n2JY.concise.ps2015-04-17 15:30 2.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_BH7n2JY.fasta2015-04-17 15:26 163 Input query sequence in FASTA format
[ ]jp_BH7n2JY.full_MSA.fasta2015-04-17 15:30 72KFull MSA before JPred filters in FASTA
[TXT]jp_BH7n2JY.full_MSA.fasta.noGaps.html2015-04-17 15:30 68KFull MSA before JPred filters in FASTA
[TXT]jp_BH7n2JY.full_MSA.fasta.withGaps.html2015-04-17 15:30 292KFull MSA before JPred filters in FASTA
[ ]jp_BH7n2JY.hmm2015-04-17 15:30 28KHHMer2 profile of the alignment
[TXT]jp_BH7n2JY.html2015-04-17 15:30 65KHTML prediction and alignment data
[ ]jp_BH7n2JY.input2015-04-17 15:26 155 Raw input data for analysis
[ ]jp_BH7n2JY.jalview2015-04-17 15:30 3.8KJalview annotation file for alignment
[ ]jp_BH7n2JY.jnet2015-04-17 15:30 5.5KJnet secondary structure output
[TXT]jp_BH7n2JY.profile2015-04-17 15:28 24KPSIBLAST profile from alignment
[ ]jp_BH7n2JY.pssm2015-04-17 15:30 32KPSIBLAST PSSM for Jnet
[TXT]jp_BH7n2JY.results.html2016-02-15 12:16 69KJPred results page
[TXT]jp_BH7n2JY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_BH7n2JY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_BH7n2JY.seq2015-04-17 15:26 163 Sequence data file
[TXT]jp_BH7n2JY.simple.html2015-04-17 15:30 1.4KBrief HTML: sequence and prediction only
[TXT]jp_BH7n2JY.svg.html2015-04-17 15:31 61KJalview SVG summary of results
[ ]jp_BH7n2JY.tar.gz2015-04-17 15:31 326KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.