JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1fx2a_.name2015-04-17 17:12 0 Job name flag file
[ ]jp_U3PmiCD.align2015-04-17 18:25 199KPSIBLAST alignment in FASTA format
[TXT]jp_U3PmiCD.als2015-04-17 18:25 3.8KAlscript command file for PS/PDF output
[ ]jp_U3PmiCD.blast.gz2015-04-17 18:23 14MCompressed PSIBLAST output file
[TXT]jp_U3PmiCD.coils.csv2015-04-17 18:25 1.4KCOILS output in CSV format
[ ]jp_U3PmiCD.coilseq.lupas_142015-04-17 18:25 9.9KCOILS output, window length 14
[ ]jp_U3PmiCD.coilseq.lupas_212015-04-17 18:25 9.9KCOILS output, window length 21
[ ]jp_U3PmiCD.coilseq.lupas_282015-04-17 18:25 9.9KCOILS output, window length 28
[ ]jp_U3PmiCD.concise2015-04-17 18:25 395KPrediction: coiled-coil, solvent, alignment
[ ]jp_U3PmiCD.concise.blc2015-04-17 18:25 200KBLC format prediction and alignment data
[ ]jp_U3PmiCD.concise.fasta2015-04-17 18:25 202KPrediction: coiled-coil, solvent, alignment
[ ]jp_U3PmiCD.concise.pdf2015-04-17 18:26 1.3MPDF prediction and alignment data
[ ]jp_U3PmiCD.concise.ps2015-04-17 18:26 24MPrediction: coiled-coil, solvent, alignment
[ ]jp_U3PmiCD.fasta2015-04-17 18:15 251 Input query sequence in FASTA format
[ ]jp_U3PmiCD.full_MSA.fasta2015-04-17 18:25 31MFull MSA before JPred filters in FASTA
[TXT]jp_U3PmiCD.full_MSA.fasta.noGaps.html2015-04-17 18:27 3.8MFull MSA before JPred filters in FASTA
[TXT]jp_U3PmiCD.full_MSA.fasta.withGaps.html2015-04-17 18:27 87MFull MSA before JPred filters in FASTA
[ ]jp_U3PmiCD.hmm2015-04-17 18:25 44KHHMer2 profile of the alignment
[TXT]jp_U3PmiCD.html2015-04-17 18:25 373KHTML prediction and alignment data
[ ]jp_U3PmiCD.input2015-04-17 17:12 242 Raw input data for analysis
[ ]jp_U3PmiCD.jalview2015-04-17 18:25 5.6KJalview annotation file for alignment
[ ]jp_U3PmiCD.jnet2015-04-17 18:25 8.6KJnet secondary structure output
[TXT]jp_U3PmiCD.profile2015-04-17 18:21 38KPSIBLAST profile from alignment
[ ]jp_U3PmiCD.pssm2015-04-17 18:25 50KPSIBLAST PSSM for Jnet
[TXT]jp_U3PmiCD.results.html2016-02-15 12:17 103KJPred results page
[TXT]jp_U3PmiCD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_U3PmiCD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_U3PmiCD.seq2015-04-17 17:12 251 Sequence data file
[TXT]jp_U3PmiCD.simple.html2015-04-17 18:25 1.7KBrief HTML: sequence and prediction only
[TXT]jp_U3PmiCD.svg.html2015-04-17 18:27 95KJalview SVG summary of results
[ ]jp_U3PmiCD.tar.gz2015-04-17 18:27 25MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.