JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:11 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1goia1.name2015-04-17 15:28 0 Job name flag file
[ ]jp_vtfOAVi.align2015-04-17 16:10 93KPSIBLAST alignment in FASTA format
[TXT]jp_vtfOAVi.als2015-04-17 16:10 1.6KAlscript command file for PS/PDF output
[ ]jp_vtfOAVi.blast.gz2015-04-17 16:08 155KCompressed PSIBLAST output file
[TXT]jp_vtfOAVi.coils.csv2015-04-17 16:10 342 COILS output in CSV format
[ ]jp_vtfOAVi.coilseq.lupas_142015-04-17 16:10 2.2KCOILS output, window length 14
[ ]jp_vtfOAVi.coilseq.lupas_212015-04-17 16:10 2.2KCOILS output, window length 21
[ ]jp_vtfOAVi.coilseq.lupas_282015-04-17 16:10 2.2KCOILS output, window length 28
[ ]jp_vtfOAVi.concise2015-04-17 16:10 172KPrediction: coiled-coil, solvent, alignment
[ ]jp_vtfOAVi.concise.blc2015-04-17 16:10 92KBLC format prediction and alignment data
[ ]jp_vtfOAVi.concise.fasta2015-04-17 16:10 93KPrediction: coiled-coil, solvent, alignment
[ ]jp_vtfOAVi.concise.pdf2015-04-17 16:11 403KPDF prediction and alignment data
[ ]jp_vtfOAVi.concise.ps2015-04-17 16:10 8.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_vtfOAVi.fasta2015-04-17 15:30 65 Input query sequence in FASTA format
[ ]jp_vtfOAVi.full_MSA.fasta2015-04-17 16:08 472KFull MSA before JPred filters in FASTA
[TXT]jp_vtfOAVi.full_MSA.fasta.noGaps.html2015-04-17 16:11 313KFull MSA before JPred filters in FASTA
[TXT]jp_vtfOAVi.full_MSA.fasta.withGaps.html2015-04-17 16:11 2.0MFull MSA before JPred filters in FASTA
[ ]jp_vtfOAVi.hmm2015-04-17 16:10 9.8KHHMer2 profile of the alignment
[TXT]jp_vtfOAVi.html2015-04-17 16:10 351KHTML prediction and alignment data
[ ]jp_vtfOAVi.input2015-04-17 15:28 59 Raw input data for analysis
[ ]jp_vtfOAVi.jalview2015-04-17 16:10 1.8KJalview annotation file for alignment
[ ]jp_vtfOAVi.jnet2015-04-17 16:10 2.0KJnet secondary structure output
[TXT]jp_vtfOAVi.profile2015-04-17 15:57 8.7KPSIBLAST profile from alignment
[ ]jp_vtfOAVi.pssm2015-04-17 16:10 11KPSIBLAST PSSM for Jnet
[TXT]jp_vtfOAVi.results.html2016-02-15 12:17 31KJPred results page
[TXT]jp_vtfOAVi.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_vtfOAVi.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_vtfOAVi.seq2015-04-17 15:28 65 Sequence data file
[TXT]jp_vtfOAVi.simple.html2015-04-17 16:10 1.0KBrief HTML: sequence and prediction only
[TXT]jp_vtfOAVi.svg.html2015-04-17 16:11 23KJalview SVG summary of results
[ ]jp_vtfOAVi.tar.gz2015-04-17 16:11 854KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.