JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:18 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1hf2a1.name2015-04-17 19:01 0 Job name flag file
[ ]jp_e7mYU__.align2015-04-17 21:18 117KPSIBLAST alignment in FASTA format
[TXT]jp_e7mYU__.als2015-04-17 21:18 2.7KAlscript command file for PS/PDF output
[ ]jp_e7mYU__.blast.gz2015-04-17 21:17 691KCompressed PSIBLAST output file
[TXT]jp_e7mYU__.coils.csv2015-04-17 21:18 672 COILS output in CSV format
[ ]jp_e7mYU__.coilseq.lupas_142015-04-17 21:18 4.5KCOILS output, window length 14
[ ]jp_e7mYU__.coilseq.lupas_212015-04-17 21:18 4.5KCOILS output, window length 21
[ ]jp_e7mYU__.coilseq.lupas_282015-04-17 21:18 4.5KCOILS output, window length 28
[ ]jp_e7mYU__.concise2015-04-17 21:18 226KPrediction: coiled-coil, solvent, alignment
[ ]jp_e7mYU__.concise.blc2015-04-17 21:18 117KBLC format prediction and alignment data
[ ]jp_e7mYU__.concise.fasta2015-04-17 21:18 118KPrediction: coiled-coil, solvent, alignment
[ ]jp_e7mYU__.concise.pdf2015-04-17 21:18 755KPDF prediction and alignment data
[ ]jp_e7mYU__.concise.ps2015-04-17 21:18 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_e7mYU__.fasta2015-04-17 21:14 121 Input query sequence in FASTA format
[ ]jp_e7mYU__.full_MSA.fasta2015-04-17 21:17 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_e7mYU__.full_MSA.fasta.noGaps.html2015-04-17 21:18 392KFull MSA before JPred filters in FASTA
[TXT]jp_e7mYU__.full_MSA.fasta.withGaps.html2015-04-17 21:18 3.8MFull MSA before JPred filters in FASTA
[ ]jp_e7mYU__.hmm2015-04-17 21:18 20KHHMer2 profile of the alignment
[TXT]jp_e7mYU__.html2015-04-17 21:18 308KHTML prediction and alignment data
[ ]jp_e7mYU__.input2015-04-17 19:01 114 Raw input data for analysis
[ ]jp_e7mYU__.jalview2015-04-17 21:18 3.0KJalview annotation file for alignment
[ ]jp_e7mYU__.jnet2015-04-17 21:18 4.0KJnet secondary structure output
[TXT]jp_e7mYU__.profile2015-04-17 21:16 17KPSIBLAST profile from alignment
[ ]jp_e7mYU__.pssm2015-04-17 21:18 23KPSIBLAST PSSM for Jnet
[TXT]jp_e7mYU__.results.html2016-02-15 12:17 53KJPred results page
[TXT]jp_e7mYU__.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_e7mYU__.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_e7mYU__.seq2015-04-17 19:01 121 Sequence data file
[TXT]jp_e7mYU__.simple.html2015-04-17 21:18 1.3KBrief HTML: sequence and prediction only
[TXT]jp_e7mYU__.svg.html2015-04-17 21:18 44KJalview SVG summary of results
[ ]jp_e7mYU__.tar.gz2015-04-17 21:18 2.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.