JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:34 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ijqa1.name2015-04-17 15:58 0 Job name flag file
[ ]jp__OfqLNo.align2015-04-17 16:31 211KPSIBLAST alignment in FASTA format
[TXT]jp__OfqLNo.als2015-04-17 16:31 4.9KAlscript command file for PS/PDF output
[ ]jp__OfqLNo.blast.gz2015-04-17 16:25 21MCompressed PSIBLAST output file
[TXT]jp__OfqLNo.coils.csv2015-04-17 16:31 1.5KCOILS output in CSV format
[ ]jp__OfqLNo.coilseq.lupas_142015-04-17 16:31 11KCOILS output, window length 14
[ ]jp__OfqLNo.coilseq.lupas_212015-04-17 16:31 11KCOILS output, window length 21
[ ]jp__OfqLNo.coilseq.lupas_282015-04-17 16:31 11KCOILS output, window length 28
[ ]jp__OfqLNo.concise2015-04-17 16:31 418KPrediction: coiled-coil, solvent, alignment
[ ]jp__OfqLNo.concise.blc2015-04-17 16:31 211KBLC format prediction and alignment data
[ ]jp__OfqLNo.concise.fasta2015-04-17 16:31 213KPrediction: coiled-coil, solvent, alignment
[ ]jp__OfqLNo.concise.pdf2015-04-17 16:31 1.4MPDF prediction and alignment data
[ ]jp__OfqLNo.concise.ps2015-04-17 16:31 26MPrediction: coiled-coil, solvent, alignment
[ ]jp__OfqLNo.fasta2015-04-17 16:16 274 Input query sequence in FASTA format
[ ]jp__OfqLNo.full_MSA.fasta2015-04-17 16:28 56MFull MSA before JPred filters in FASTA
[TXT]jp__OfqLNo.full_MSA.fasta.noGaps.html2015-04-17 16:34 3.3MFull MSA before JPred filters in FASTA
[TXT]jp__OfqLNo.full_MSA.fasta.withGaps.html2015-04-17 16:33 110MFull MSA before JPred filters in FASTA
[ ]jp__OfqLNo.hmm2015-04-17 16:31 48KHHMer2 profile of the alignment
[TXT]jp__OfqLNo.html2015-04-17 16:31 381KHTML prediction and alignment data
[ ]jp__OfqLNo.input2015-04-17 15:58 265 Raw input data for analysis
[ ]jp__OfqLNo.jalview2015-04-17 16:31 6.0KJalview annotation file for alignment
[ ]jp__OfqLNo.jnet2015-04-17 16:31 9.4KJnet secondary structure output
[TXT]jp__OfqLNo.profile2015-04-17 16:23 41KPSIBLAST profile from alignment
[ ]jp__OfqLNo.pssm2015-04-17 16:31 55KPSIBLAST PSSM for Jnet
[TXT]jp__OfqLNo.results.html2016-02-15 12:17 112KJPred results page
[TXT]jp__OfqLNo.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__OfqLNo.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__OfqLNo.seq2015-04-17 15:58 274 Sequence data file
[TXT]jp__OfqLNo.simple.html2015-04-17 16:31 2.0KBrief HTML: sequence and prediction only
[TXT]jp__OfqLNo.svg.html2015-04-17 16:34 104KJalview SVG summary of results
[ ]jp__OfqLNo.tar.gz2015-04-17 16:34 33MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.