JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1j5ua_.name2015-04-17 17:50 0 Job name flag file
[ ]jp_WiTh17u.align2015-04-17 19:24 80KPSIBLAST alignment in FASTA format
[TXT]jp_WiTh17u.als2015-04-17 19:24 2.5KAlscript command file for PS/PDF output
[ ]jp_WiTh17u.blast.gz2015-04-17 19:24 248KCompressed PSIBLAST output file
[TXT]jp_WiTh17u.coils.csv2015-04-17 19:24 792 COILS output in CSV format
[ ]jp_WiTh17u.coilseq.lupas_142015-04-17 19:24 5.3KCOILS output, window length 14
[ ]jp_WiTh17u.coilseq.lupas_212015-04-17 19:24 5.3KCOILS output, window length 21
[ ]jp_WiTh17u.coilseq.lupas_282015-04-17 19:24 5.3KCOILS output, window length 28
[ ]jp_WiTh17u.concise2015-04-17 19:24 157KPrediction: coiled-coil, solvent, alignment
[ ]jp_WiTh17u.concise.blc2015-04-17 19:24 80KBLC format prediction and alignment data
[ ]jp_WiTh17u.concise.fasta2015-04-17 19:24 81KPrediction: coiled-coil, solvent, alignment
[ ]jp_WiTh17u.concise.pdf2015-04-17 19:24 560KPDF prediction and alignment data
[ ]jp_WiTh17u.concise.ps2015-04-17 19:24 9.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_WiTh17u.fasta2015-04-17 19:18 141 Input query sequence in FASTA format
[ ]jp_WiTh17u.full_MSA.fasta2015-04-17 19:24 820KFull MSA before JPred filters in FASTA
[TXT]jp_WiTh17u.full_MSA.fasta.noGaps.html2015-04-17 19:24 174KFull MSA before JPred filters in FASTA
[TXT]jp_WiTh17u.full_MSA.fasta.withGaps.html2015-04-17 19:24 2.5MFull MSA before JPred filters in FASTA
[ ]jp_WiTh17u.hmm2015-04-17 19:24 24KHHMer2 profile of the alignment
[TXT]jp_WiTh17u.html2015-04-17 19:24 200KHTML prediction and alignment data
[ ]jp_WiTh17u.input2015-04-17 17:50 134 Raw input data for analysis
[ ]jp_WiTh17u.jalview2015-04-17 19:24 3.4KJalview annotation file for alignment
[ ]jp_WiTh17u.jnet2015-04-17 19:24 4.7KJnet secondary structure output
[TXT]jp_WiTh17u.profile2015-04-17 19:22 21KPSIBLAST profile from alignment
[ ]jp_WiTh17u.pssm2015-04-17 19:24 27KPSIBLAST PSSM for Jnet
[TXT]jp_WiTh17u.results.html2016-02-15 12:17 60KJPred results page
[TXT]jp_WiTh17u.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_WiTh17u.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_WiTh17u.seq2015-04-17 17:50 141 Sequence data file
[TXT]jp_WiTh17u.simple.html2015-04-17 19:24 1.3KBrief HTML: sequence and prediction only
[TXT]jp_WiTh17u.svg.html2015-04-17 19:25 52KJalview SVG summary of results
[ ]jp_WiTh17u.tar.gz2015-04-17 19:25 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.