JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:59 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1jm1a_.name2015-04-17 15:42 0 Job name flag file
[ ]jp_E0UG747.align2015-04-17 15:59 92KPSIBLAST alignment in FASTA format
[TXT]jp_E0UG747.als2015-04-17 15:59 3.0KAlscript command file for PS/PDF output
[ ]jp_E0UG747.blast.gz2015-04-17 15:58 2.8MCompressed PSIBLAST output file
[TXT]jp_E0UG747.coils.csv2015-04-17 15:59 1.2KCOILS output in CSV format
[ ]jp_E0UG747.coilseq.lupas_142015-04-17 15:59 8.5KCOILS output, window length 14
[ ]jp_E0UG747.coilseq.lupas_212015-04-17 15:59 8.5KCOILS output, window length 21
[ ]jp_E0UG747.coilseq.lupas_282015-04-17 15:59 8.5KCOILS output, window length 28
[ ]jp_E0UG747.concise2015-04-17 15:59 186KPrediction: coiled-coil, solvent, alignment
[ ]jp_E0UG747.concise.blc2015-04-17 15:59 94KBLC format prediction and alignment data
[ ]jp_E0UG747.concise.fasta2015-04-17 15:59 94KPrediction: coiled-coil, solvent, alignment
[ ]jp_E0UG747.concise.pdf2015-04-17 15:59 544KPDF prediction and alignment data
[ ]jp_E0UG747.concise.ps2015-04-17 15:59 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_E0UG747.fasta2015-04-17 15:53 217 Input query sequence in FASTA format
[ ]jp_E0UG747.full_MSA.fasta2015-04-17 15:58 9.6MFull MSA before JPred filters in FASTA
[TXT]jp_E0UG747.full_MSA.fasta.noGaps.html2015-04-17 15:59 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_E0UG747.full_MSA.fasta.withGaps.html2015-04-17 15:59 35MFull MSA before JPred filters in FASTA
[ ]jp_E0UG747.hmm2015-04-17 15:59 38KHHMer2 profile of the alignment
[TXT]jp_E0UG747.html2015-04-17 15:59 186KHTML prediction and alignment data
[ ]jp_E0UG747.input2015-04-17 15:42 209 Raw input data for analysis
[ ]jp_E0UG747.jalview2015-04-17 15:59 4.7KJalview annotation file for alignment
[ ]jp_E0UG747.jnet2015-04-17 15:59 7.4KJnet secondary structure output
[TXT]jp_E0UG747.profile2015-04-17 15:56 32KPSIBLAST profile from alignment
[ ]jp_E0UG747.pssm2015-04-17 15:59 43KPSIBLAST PSSM for Jnet
[TXT]jp_E0UG747.results.html2016-02-15 12:17 87KJPred results page
[TXT]jp_E0UG747.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_E0UG747.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_E0UG747.seq2015-04-17 15:42 217 Sequence data file
[TXT]jp_E0UG747.simple.html2015-04-17 15:59 1.5KBrief HTML: sequence and prediction only
[TXT]jp_E0UG747.svg.html2015-04-17 15:59 79KJalview SVG summary of results
[ ]jp_E0UG747.tar.gz2015-04-17 15:59 6.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.