JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1jofa_.name2015-04-17 19:02 0 Job name flag file
[ ]jp_1H7TFpn.align2015-04-17 21:27 353KPSIBLAST alignment in FASTA format
[TXT]jp_1H7TFpn.als2015-04-17 21:27 5.8KAlscript command file for PS/PDF output
[ ]jp_1H7TFpn.blast.gz2015-04-17 21:23 17MCompressed PSIBLAST output file
[TXT]jp_1H7TFpn.coils.csv2015-04-17 21:27 2.2KCOILS output in CSV format
[ ]jp_1H7TFpn.coilseq.lupas_142015-04-17 21:27 15KCOILS output, window length 14
[ ]jp_1H7TFpn.coilseq.lupas_212015-04-17 21:27 15KCOILS output, window length 21
[ ]jp_1H7TFpn.coilseq.lupas_282015-04-17 21:27 15KCOILS output, window length 28
[ ]jp_1H7TFpn.concise2015-04-17 21:27 701KPrediction: coiled-coil, solvent, alignment
[ ]jp_1H7TFpn.concise.blc2015-04-17 21:27 353KBLC format prediction and alignment data
[ ]jp_1H7TFpn.concise.fasta2015-04-17 21:27 356KPrediction: coiled-coil, solvent, alignment
[ ]jp_1H7TFpn.concise.pdf2015-04-17 21:28 2.4MPDF prediction and alignment data
[ ]jp_1H7TFpn.concise.ps2015-04-17 21:27 43MPrediction: coiled-coil, solvent, alignment
[ ]jp_1H7TFpn.fasta2015-04-17 21:17 383 Input query sequence in FASTA format
[ ]jp_1H7TFpn.full_MSA.fasta2015-04-17 21:25 67MFull MSA before JPred filters in FASTA
[TXT]jp_1H7TFpn.full_MSA.fasta.noGaps.html2015-04-17 21:29 4.2MFull MSA before JPred filters in FASTA
[TXT]jp_1H7TFpn.full_MSA.fasta.withGaps.html2015-04-17 21:29 144MFull MSA before JPred filters in FASTA
[ ]jp_1H7TFpn.hmm2015-04-17 21:27 68KHHMer2 profile of the alignment
[TXT]jp_1H7TFpn.html2015-04-17 21:27 559KHTML prediction and alignment data
[ ]jp_1H7TFpn.input2015-04-17 19:02 372 Raw input data for analysis
[ ]jp_1H7TFpn.jalview2015-04-17 21:27 8.1KJalview annotation file for alignment
[ ]jp_1H7TFpn.jnet2015-04-17 21:27 13KJnet secondary structure output
[TXT]jp_1H7TFpn.profile2015-04-17 21:21 58KPSIBLAST profile from alignment
[ ]jp_1H7TFpn.pssm2015-04-17 21:27 78KPSIBLAST PSSM for Jnet
[TXT]jp_1H7TFpn.results.html2016-02-15 12:17 152KJPred results page
[TXT]jp_1H7TFpn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_1H7TFpn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_1H7TFpn.seq2015-04-17 19:02 383 Sequence data file
[TXT]jp_1H7TFpn.simple.html2015-04-17 21:27 2.4KBrief HTML: sequence and prediction only
[TXT]jp_1H7TFpn.svg.html2015-04-17 21:29 144KJalview SVG summary of results
[ ]jp_1H7TFpn.tar.gz2015-04-17 21:29 33MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.