JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:26 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k4ia_.name2015-04-17 15:59 0 Job name flag file
[ ]jp_vMzP3ZW.align2015-04-17 16:25 159KPSIBLAST alignment in FASTA format
[TXT]jp_vMzP3ZW.als2015-04-17 16:25 3.4KAlscript command file for PS/PDF output
[ ]jp_vMzP3ZW.blast.gz2015-04-17 16:24 2.5MCompressed PSIBLAST output file
[TXT]jp_vMzP3ZW.coils.csv2015-04-17 16:25 1.3KCOILS output in CSV format
[ ]jp_vMzP3ZW.coilseq.lupas_142015-04-17 16:25 9.1KCOILS output, window length 14
[ ]jp_vMzP3ZW.coilseq.lupas_212015-04-17 16:25 9.1KCOILS output, window length 21
[ ]jp_vMzP3ZW.coilseq.lupas_282015-04-17 16:25 9.1KCOILS output, window length 28
[ ]jp_vMzP3ZW.concise2015-04-17 16:25 316KPrediction: coiled-coil, solvent, alignment
[ ]jp_vMzP3ZW.concise.blc2015-04-17 16:25 160KBLC format prediction and alignment data
[ ]jp_vMzP3ZW.concise.fasta2015-04-17 16:25 162KPrediction: coiled-coil, solvent, alignment
[ ]jp_vMzP3ZW.concise.pdf2015-04-17 16:25 1.0MPDF prediction and alignment data
[ ]jp_vMzP3ZW.concise.ps2015-04-17 16:25 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_vMzP3ZW.fasta2015-04-17 16:17 232 Input query sequence in FASTA format
[ ]jp_vMzP3ZW.full_MSA.fasta2015-04-17 16:24 3.6MFull MSA before JPred filters in FASTA
[TXT]jp_vMzP3ZW.full_MSA.fasta.noGaps.html2015-04-17 16:26 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_vMzP3ZW.full_MSA.fasta.withGaps.html2015-04-17 16:26 12MFull MSA before JPred filters in FASTA
[ ]jp_vMzP3ZW.hmm2015-04-17 16:25 41KHHMer2 profile of the alignment
[TXT]jp_vMzP3ZW.html2015-04-17 16:25 311KHTML prediction and alignment data
[ ]jp_vMzP3ZW.input2015-04-17 15:59 223 Raw input data for analysis
[ ]jp_vMzP3ZW.jalview2015-04-17 16:25 5.1KJalview annotation file for alignment
[ ]jp_vMzP3ZW.jnet2015-04-17 16:25 7.9KJnet secondary structure output
[TXT]jp_vMzP3ZW.profile2015-04-17 16:22 35KPSIBLAST profile from alignment
[ ]jp_vMzP3ZW.pssm2015-04-17 16:25 46KPSIBLAST PSSM for Jnet
[TXT]jp_vMzP3ZW.results.html2016-02-15 12:17 95KJPred results page
[TXT]jp_vMzP3ZW.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_vMzP3ZW.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_vMzP3ZW.seq2015-04-17 15:59 232 Sequence data file
[TXT]jp_vMzP3ZW.simple.html2015-04-17 16:25 1.7KBrief HTML: sequence and prediction only
[TXT]jp_vMzP3ZW.svg.html2015-04-17 16:26 87KJalview SVG summary of results
[ ]jp_vMzP3ZW.tar.gz2015-04-17 16:26 5.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.