JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:51 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1klxa_.name2015-04-17 17:15 0 Job name flag file
[ ]jp_9mT2utd.align2015-04-17 18:46 142KPSIBLAST alignment in FASTA format
[TXT]jp_9mT2utd.als2015-04-17 18:46 2.3KAlscript command file for PS/PDF output
[ ]jp_9mT2utd.blast.gz2015-04-17 18:36 63MCompressed PSIBLAST output file
[TXT]jp_9mT2utd.coils.csv2015-04-17 18:46 828 COILS output in CSV format
[ ]jp_9mT2utd.coilseq.lupas_142015-04-17 18:46 5.6KCOILS output, window length 14
[ ]jp_9mT2utd.coilseq.lupas_212015-04-17 18:46 5.6KCOILS output, window length 21
[ ]jp_9mT2utd.coilseq.lupas_282015-04-17 18:46 5.6KCOILS output, window length 28
[ ]jp_9mT2utd.concise2015-04-17 18:46 276KPrediction: coiled-coil, solvent, alignment
[ ]jp_9mT2utd.concise.blc2015-04-17 18:46 142KBLC format prediction and alignment data
[ ]jp_9mT2utd.concise.fasta2015-04-17 18:46 143KPrediction: coiled-coil, solvent, alignment
[ ]jp_9mT2utd.concise.pdf2015-04-17 18:47 890KPDF prediction and alignment data
[ ]jp_9mT2utd.concise.ps2015-04-17 18:46 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_9mT2utd.fasta2015-04-17 18:20 147 Input query sequence in FASTA format
[ ]jp_9mT2utd.full_MSA.fasta2015-04-17 18:43 219MFull MSA before JPred filters in FASTA
[TXT]jp_9mT2utd.full_MSA.fasta.noGaps.html2015-04-17 18:51 12MFull MSA before JPred filters in FASTA
[TXT]jp_9mT2utd.full_MSA.fasta.withGaps.html2015-04-17 18:51 359MFull MSA before JPred filters in FASTA
[ ]jp_9mT2utd.hmm2015-04-17 18:46 25KHHMer2 profile of the alignment
[TXT]jp_9mT2utd.html2015-04-17 18:46 340KHTML prediction and alignment data
[ ]jp_9mT2utd.input2015-04-17 17:15 140 Raw input data for analysis
[ ]jp_9mT2utd.jalview2015-04-17 18:46 3.6KJalview annotation file for alignment
[ ]jp_9mT2utd.jnet2015-04-17 18:46 4.9KJnet secondary structure output
[TXT]jp_9mT2utd.profile2015-04-17 18:32 22KPSIBLAST profile from alignment
[ ]jp_9mT2utd.pssm2015-04-17 18:46 29KPSIBLAST PSSM for Jnet
[TXT]jp_9mT2utd.results.html2016-02-15 12:17 63KJPred results page
[TXT]jp_9mT2utd.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_9mT2utd.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_9mT2utd.seq2015-04-17 17:15 147 Sequence data file
[TXT]jp_9mT2utd.simple.html2015-04-17 18:46 1.3KBrief HTML: sequence and prediction only
[TXT]jp_9mT2utd.svg.html2015-04-17 18:51 55KJalview SVG summary of results
[ ]jp_9mT2utd.tar.gz2015-04-17 18:52 90MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.