JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_G7Pf2jf.input2015-04-17 19:04 136 Raw input data for analysis
[ ]jp_G7Pf2jf.seq2015-04-17 19:04 143 Sequence data file
[TXT]d1knma_.name2015-04-17 19:04 0 Job name flag file
[ ]jp_G7Pf2jf.fasta2015-04-17 21:19 143 Input query sequence in FASTA format
[TXT]jp_G7Pf2jf.profile2015-04-17 21:22 21KPSIBLAST profile from alignment
[ ]jp_G7Pf2jf.blast.gz2015-04-17 21:23 8.1MCompressed PSIBLAST output file
[ ]jp_G7Pf2jf.full_MSA.fasta2015-04-17 21:23 17MFull MSA before JPred filters in FASTA
[ ]jp_G7Pf2jf.align2015-04-17 21:24 127KPSIBLAST alignment in FASTA format
[ ]jp_G7Pf2jf.pssm2015-04-17 21:24 28KPSIBLAST PSSM for Jnet
[ ]jp_G7Pf2jf.hmm2015-04-17 21:24 24KHHMer2 profile of the alignment
[ ]jp_G7Pf2jf.jnet2015-04-17 21:24 4.8KJnet secondary structure output
[ ]jp_G7Pf2jf.coilseq.lupas_212015-04-17 21:24 5.4KCOILS output, window length 21
[ ]jp_G7Pf2jf.coilseq.lupas_142015-04-17 21:24 5.4KCOILS output, window length 14
[ ]jp_G7Pf2jf.coilseq.lupas_282015-04-17 21:24 5.4KCOILS output, window length 28
[TXT]jp_G7Pf2jf.coils.csv2015-04-17 21:24 804 COILS output in CSV format
[ ]jp_G7Pf2jf.concise2015-04-17 21:24 247KPrediction: coiled-coil, solvent, alignment
[TXT]jp_G7Pf2jf.html2015-04-17 21:24 305KHTML prediction and alignment data
[TXT]jp_G7Pf2jf.simple.html2015-04-17 21:24 1.4KBrief HTML: sequence and prediction only
[ ]jp_G7Pf2jf.jalview2015-04-17 21:24 3.4KJalview annotation file for alignment
[ ]jp_G7Pf2jf.concise.fasta2015-04-17 21:24 128KPrediction: coiled-coil, solvent, alignment
[ ]jp_G7Pf2jf.concise.blc2015-04-17 21:24 127KBLC format prediction and alignment data
[TXT]jp_G7Pf2jf.als2015-04-17 21:24 3.0KAlscript command file for PS/PDF output
[ ]jp_G7Pf2jf.concise.ps2015-04-17 21:24 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_G7Pf2jf.concise.pdf2015-04-17 21:24 784KPDF prediction and alignment data
[TXT]jp_G7Pf2jf.full_MSA.fasta.withGaps.html2015-04-17 21:24 40MFull MSA before JPred filters in FASTA
[TXT]jp_G7Pf2jf.full_MSA.fasta.noGaps.html2015-04-17 21:24 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_G7Pf2jf.svg.html2015-04-17 21:25 53KJalview SVG summary of results
[TXT]LOG2015-04-17 21:25 4.7KJPred server log file
[ ]jp_G7Pf2jf.tar.gz2015-04-17 21:25 13MArchive containing complete results
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]jp_G7Pf2jf.results.html2016-02-15 12:17 61KJPred results page
[TXT]jp_G7Pf2jf.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_G7Pf2jf.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.