JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:35 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kqpa_.name2015-04-17 19:04 0 Job name flag file
[ ]jp_Ir3HGqN.align2015-04-17 21:34 267KPSIBLAST alignment in FASTA format
[TXT]jp_Ir3HGqN.als2015-04-17 21:34 3.5KAlscript command file for PS/PDF output
[ ]jp_Ir3HGqN.blast.gz2015-04-17 21:31 10MCompressed PSIBLAST output file
[TXT]jp_Ir3HGqN.coils.csv2015-04-17 21:34 1.6KCOILS output in CSV format
[ ]jp_Ir3HGqN.coilseq.lupas_142015-04-17 21:34 11KCOILS output, window length 14
[ ]jp_Ir3HGqN.coilseq.lupas_212015-04-17 21:34 11KCOILS output, window length 21
[ ]jp_Ir3HGqN.coilseq.lupas_282015-04-17 21:34 11KCOILS output, window length 28
[ ]jp_Ir3HGqN.concise2015-04-17 21:34 530KPrediction: coiled-coil, solvent, alignment
[ ]jp_Ir3HGqN.concise.blc2015-04-17 21:34 268KBLC format prediction and alignment data
[ ]jp_Ir3HGqN.concise.fasta2015-04-17 21:34 270KPrediction: coiled-coil, solvent, alignment
[ ]jp_Ir3HGqN.concise.pdf2015-04-17 21:34 1.8MPDF prediction and alignment data
[ ]jp_Ir3HGqN.concise.ps2015-04-17 21:34 33MPrediction: coiled-coil, solvent, alignment
[ ]jp_Ir3HGqN.fasta2015-04-17 21:21 287 Input query sequence in FASTA format
[ ]jp_Ir3HGqN.full_MSA.fasta2015-04-17 21:32 22MFull MSA before JPred filters in FASTA
[TXT]jp_Ir3HGqN.full_MSA.fasta.noGaps.html2015-04-17 21:35 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_Ir3HGqN.full_MSA.fasta.withGaps.html2015-04-17 21:35 50MFull MSA before JPred filters in FASTA
[ ]jp_Ir3HGqN.hmm2015-04-17 21:34 51KHHMer2 profile of the alignment
[TXT]jp_Ir3HGqN.html2015-04-17 21:34 471KHTML prediction and alignment data
[ ]jp_Ir3HGqN.input2015-04-17 19:04 278 Raw input data for analysis
[ ]jp_Ir3HGqN.jalview2015-04-17 21:34 6.3KJalview annotation file for alignment
[ ]jp_Ir3HGqN.jnet2015-04-17 21:34 9.9KJnet secondary structure output
[TXT]jp_Ir3HGqN.profile2015-04-17 21:28 43KPSIBLAST profile from alignment
[ ]jp_Ir3HGqN.pssm2015-04-17 21:34 58KPSIBLAST PSSM for Jnet
[TXT]jp_Ir3HGqN.results.html2016-02-15 12:17 116KJPred results page
[TXT]jp_Ir3HGqN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Ir3HGqN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Ir3HGqN.seq2015-04-17 19:04 287 Sequence data file
[TXT]jp_Ir3HGqN.simple.html2015-04-17 21:34 1.8KBrief HTML: sequence and prediction only
[TXT]jp_Ir3HGqN.svg.html2015-04-17 21:35 108KJalview SVG summary of results
[ ]jp_Ir3HGqN.tar.gz2015-04-17 21:35 17MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.