JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:58 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1lsha1.name2015-04-17 17:16 0 Job name flag file
[ ]jp_u7JC9Hu.align2015-04-17 18:57 218KPSIBLAST alignment in FASTA format
[TXT]jp_u7JC9Hu.als2015-04-17 18:57 3.9KAlscript command file for PS/PDF output
[ ]jp_u7JC9Hu.blast.gz2015-04-17 18:56 1.5MCompressed PSIBLAST output file
[TXT]jp_u7JC9Hu.coils.csv2015-04-17 18:57 2.0KCOILS output in CSV format
[ ]jp_u7JC9Hu.coilseq.lupas_142015-04-17 18:57 14KCOILS output, window length 14
[ ]jp_u7JC9Hu.coilseq.lupas_212015-04-17 18:57 14KCOILS output, window length 21
[ ]jp_u7JC9Hu.coilseq.lupas_282015-04-17 18:57 14KCOILS output, window length 28
[ ]jp_u7JC9Hu.concise2015-04-17 18:57 438KPrediction: coiled-coil, solvent, alignment
[ ]jp_u7JC9Hu.concise.blc2015-04-17 18:57 220KBLC format prediction and alignment data
[ ]jp_u7JC9Hu.concise.fasta2015-04-17 18:57 221KPrediction: coiled-coil, solvent, alignment
[ ]jp_u7JC9Hu.concise.pdf2015-04-17 18:57 1.6MPDF prediction and alignment data
[ ]jp_u7JC9Hu.concise.ps2015-04-17 18:57 28MPrediction: coiled-coil, solvent, alignment
[ ]jp_u7JC9Hu.fasta2015-04-17 18:23 353 Input query sequence in FASTA format
[ ]jp_u7JC9Hu.full_MSA.fasta2015-04-17 18:56 3.0MFull MSA before JPred filters in FASTA
[TXT]jp_u7JC9Hu.full_MSA.fasta.noGaps.html2015-04-17 18:58 512KFull MSA before JPred filters in FASTA
[TXT]jp_u7JC9Hu.full_MSA.fasta.withGaps.html2015-04-17 18:58 10MFull MSA before JPred filters in FASTA
[ ]jp_u7JC9Hu.hmm2015-04-17 18:57 63KHHMer2 profile of the alignment
[TXT]jp_u7JC9Hu.html2015-04-17 18:57 371KHTML prediction and alignment data
[ ]jp_u7JC9Hu.input2015-04-17 17:16 343 Raw input data for analysis
[ ]jp_u7JC9Hu.jalview2015-04-17 18:57 7.7KJalview annotation file for alignment
[ ]jp_u7JC9Hu.jnet2015-04-17 18:57 12KJnet secondary structure output
[TXT]jp_u7JC9Hu.profile2015-04-17 18:46 54KPSIBLAST profile from alignment
[ ]jp_u7JC9Hu.pssm2015-04-17 18:57 72KPSIBLAST PSSM for Jnet
[TXT]jp_u7JC9Hu.results.html2016-02-15 12:17 142KJPred results page
[TXT]jp_u7JC9Hu.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_u7JC9Hu.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_u7JC9Hu.seq2015-04-17 17:16 353 Sequence data file
[TXT]jp_u7JC9Hu.simple.html2015-04-17 18:57 2.0KBrief HTML: sequence and prediction only
[TXT]jp_u7JC9Hu.svg.html2015-04-17 18:58 134KJalview SVG summary of results
[ ]jp_u7JC9Hu.tar.gz2015-04-17 18:58 4.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.