JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:53 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1m15a2.name2015-04-17 15:24 0 Job name flag file
[ ]jp_wTUokY1.align2015-04-17 15:52 201KPSIBLAST alignment in FASTA format
[TXT]jp_wTUokY1.als2015-04-17 15:52 3.8KAlscript command file for PS/PDF output
[ ]jp_wTUokY1.blast.gz2015-04-17 15:51 1.2MCompressed PSIBLAST output file
[TXT]jp_wTUokY1.coils.csv2015-04-17 15:52 1.6KCOILS output in CSV format
[ ]jp_wTUokY1.coilseq.lupas_142015-04-17 15:52 11KCOILS output, window length 14
[ ]jp_wTUokY1.coilseq.lupas_212015-04-17 15:52 11KCOILS output, window length 21
[ ]jp_wTUokY1.coilseq.lupas_282015-04-17 15:52 11KCOILS output, window length 28
[ ]jp_wTUokY1.concise2015-04-17 15:52 401KPrediction: coiled-coil, solvent, alignment
[ ]jp_wTUokY1.concise.blc2015-04-17 15:52 202KBLC format prediction and alignment data
[ ]jp_wTUokY1.concise.fasta2015-04-17 15:52 204KPrediction: coiled-coil, solvent, alignment
[ ]jp_wTUokY1.concise.pdf2015-04-17 15:52 1.4MPDF prediction and alignment data
[ ]jp_wTUokY1.concise.ps2015-04-17 15:52 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_wTUokY1.fasta2015-04-17 15:24 278 Input query sequence in FASTA format
[ ]jp_wTUokY1.full_MSA.fasta2015-04-17 15:51 1.6MFull MSA before JPred filters in FASTA
[TXT]jp_wTUokY1.full_MSA.fasta.noGaps.html2015-04-17 15:53 534KFull MSA before JPred filters in FASTA
[TXT]jp_wTUokY1.full_MSA.fasta.withGaps.html2015-04-17 15:53 6.9MFull MSA before JPred filters in FASTA
[ ]jp_wTUokY1.hmm2015-04-17 15:52 49KHHMer2 profile of the alignment
[TXT]jp_wTUokY1.html2015-04-17 15:52 364KHTML prediction and alignment data
[ ]jp_wTUokY1.input2015-04-17 15:24 269 Raw input data for analysis
[ ]jp_wTUokY1.jalview2015-04-17 15:52 6.1KJalview annotation file for alignment
[ ]jp_wTUokY1.jnet2015-04-17 15:52 9.6KJnet secondary structure output
[TXT]jp_wTUokY1.profile2015-04-17 15:39 42KPSIBLAST profile from alignment
[ ]jp_wTUokY1.pssm2015-04-17 15:52 56KPSIBLAST PSSM for Jnet
[TXT]jp_wTUokY1.results.html2016-02-15 12:17 113KJPred results page
[TXT]jp_wTUokY1.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_wTUokY1.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_wTUokY1.seq2015-04-17 15:24 278 Sequence data file
[TXT]jp_wTUokY1.simple.html2015-04-17 15:52 1.8KBrief HTML: sequence and prediction only
[TXT]jp_wTUokY1.svg.html2015-04-17 15:53 105KJalview SVG summary of results
[ ]jp_wTUokY1.tar.gz2015-04-17 15:53 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.