JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1na6a1.name2015-04-17 19:06 0 Job name flag file
[ ]jp_Yu5L75f.align2015-04-17 21:29 31KPSIBLAST alignment in FASTA format
[TXT]jp_Yu5L75f.als2015-04-17 21:29 3.1KAlscript command file for PS/PDF output
[ ]jp_Yu5L75f.blast.gz2015-04-17 21:29 123KCompressed PSIBLAST output file
[TXT]jp_Yu5L75f.coils.csv2015-04-17 21:29 1.0KCOILS output in CSV format
[ ]jp_Yu5L75f.coilseq.lupas_142015-04-17 21:29 7.2KCOILS output, window length 14
[ ]jp_Yu5L75f.coilseq.lupas_212015-04-17 21:29 7.2KCOILS output, window length 21
[ ]jp_Yu5L75f.coilseq.lupas_282015-04-17 21:29 7.2KCOILS output, window length 28
[ ]jp_Yu5L75f.concise2015-04-17 21:29 67KPrediction: coiled-coil, solvent, alignment
[ ]jp_Yu5L75f.concise.blc2015-04-17 21:29 33KBLC format prediction and alignment data
[ ]jp_Yu5L75f.concise.fasta2015-04-17 21:29 33KPrediction: coiled-coil, solvent, alignment
[ ]jp_Yu5L75f.concise.pdf2015-04-17 21:29 186KPDF prediction and alignment data
[ ]jp_Yu5L75f.concise.ps2015-04-17 21:29 3.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_Yu5L75f.fasta2015-04-17 21:25 187 Input query sequence in FASTA format
[ ]jp_Yu5L75f.full_MSA.fasta2015-04-17 21:29 476KFull MSA before JPred filters in FASTA
[TXT]jp_Yu5L75f.full_MSA.fasta.noGaps.html2015-04-17 21:29 262KFull MSA before JPred filters in FASTA
[TXT]jp_Yu5L75f.full_MSA.fasta.withGaps.html2015-04-17 21:29 2.4MFull MSA before JPred filters in FASTA
[ ]jp_Yu5L75f.hmm2015-04-17 21:29 32KHHMer2 profile of the alignment
[TXT]jp_Yu5L75f.html2015-04-17 21:29 78KHTML prediction and alignment data
[ ]jp_Yu5L75f.input2015-04-17 19:06 179 Raw input data for analysis
[ ]jp_Yu5L75f.jalview2015-04-17 21:29 4.2KJalview annotation file for alignment
[ ]jp_Yu5L75f.jnet2015-04-17 21:29 6.3KJnet secondary structure output
[TXT]jp_Yu5L75f.profile2015-04-17 21:28 28KPSIBLAST profile from alignment
[ ]jp_Yu5L75f.pssm2015-04-17 21:29 37KPSIBLAST PSSM for Jnet
[TXT]jp_Yu5L75f.results.html2016-02-15 12:17 78KJPred results page
[TXT]jp_Yu5L75f.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Yu5L75f.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Yu5L75f.seq2015-04-17 19:06 187 Sequence data file
[TXT]jp_Yu5L75f.simple.html2015-04-17 21:29 1.5KBrief HTML: sequence and prediction only
[TXT]jp_Yu5L75f.svg.html2015-04-17 21:29 70KJalview SVG summary of results
[ ]jp_Yu5L75f.tar.gz2015-04-17 21:29 494KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.