JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nkza_.name2015-04-17 17:52 0 Job name flag file
[ ]jp_obc0nvX.align2015-04-17 19:27 274 PSIBLAST alignment in FASTA format
[TXT]jp_obc0nvX.als2015-04-17 19:27 1.6KAlscript command file for PS/PDF output
[ ]jp_obc0nvX.blast.gz2015-04-17 19:27 1.8KCompressed PSIBLAST output file
[TXT]jp_obc0nvX.coils.csv2015-04-17 19:27 348 COILS output in CSV format
[ ]jp_obc0nvX.coilseq.lupas_142015-04-17 19:27 2.2KCOILS output, window length 14
[ ]jp_obc0nvX.coilseq.lupas_212015-04-17 19:27 2.2KCOILS output, window length 21
[ ]jp_obc0nvX.coilseq.lupas_282015-04-17 19:27 2.2KCOILS output, window length 28
[ ]jp_obc0nvX.concise2015-04-17 19:27 2.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_obc0nvX.concise.blc2015-04-17 19:27 1.1KBLC format prediction and alignment data
[ ]jp_obc0nvX.concise.fasta2015-04-17 19:27 914 Prediction: coiled-coil, solvent, alignment
[ ]jp_obc0nvX.concise.pdf2015-04-17 19:27 9.1KPDF prediction and alignment data
[ ]jp_obc0nvX.concise.ps2015-04-17 19:27 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_obc0nvX.fasta2015-04-17 19:23 66 Input query sequence in FASTA format
[ ]jp_obc0nvX.full_MSA.fasta2015-04-17 19:27 345 Full MSA before JPred filters in FASTA
[TXT]jp_obc0nvX.full_MSA.fasta.noGaps.html2015-04-17 19:27 1.0KFull MSA before JPred filters in FASTA
[TXT]jp_obc0nvX.full_MSA.fasta.withGaps.html2015-04-17 19:27 1.0KFull MSA before JPred filters in FASTA
[ ]jp_obc0nvX.hmm2015-04-17 19:27 9.9KHHMer2 profile of the alignment
[TXT]jp_obc0nvX.html2015-04-17 19:27 8.2KHTML prediction and alignment data
[ ]jp_obc0nvX.input2015-04-17 17:52 60 Raw input data for analysis
[ ]jp_obc0nvX.jalview2015-04-17 19:27 1.9KJalview annotation file for alignment
[ ]jp_obc0nvX.jnet2015-04-17 19:27 2.0KJnet secondary structure output
[TXT]jp_obc0nvX.profile2015-04-17 19:24 8.9KPSIBLAST profile from alignment
[ ]jp_obc0nvX.pssm2015-04-17 19:27 11KPSIBLAST PSSM for Jnet
[TXT]jp_obc0nvX.results.html2016-02-15 12:17 32KJPred results page
[TXT]jp_obc0nvX.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_obc0nvX.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_obc0nvX.seq2015-04-17 17:52 66 Sequence data file
[TXT]jp_obc0nvX.simple.html2015-04-17 19:27 1.0KBrief HTML: sequence and prediction only
[TXT]jp_obc0nvX.svg.html2015-04-17 19:27 24KJalview SVG summary of results
[ ]jp_obc0nvX.tar.gz2015-04-17 19:27 28KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.