JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:31 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1o3ua_.name2015-04-17 16:04 0 Job name flag file
[ ]jp_ux0ghTO.align2015-04-17 16:30 103KPSIBLAST alignment in FASTA format
[TXT]jp_ux0ghTO.als2015-04-17 16:30 1.9KAlscript command file for PS/PDF output
[ ]jp_ux0ghTO.blast.gz2015-04-17 16:30 382KCompressed PSIBLAST output file
[TXT]jp_ux0ghTO.coils.csv2015-04-17 16:30 750 COILS output in CSV format
[ ]jp_ux0ghTO.coilseq.lupas_142015-04-17 16:30 5.0KCOILS output, window length 14
[ ]jp_ux0ghTO.coilseq.lupas_212015-04-17 16:30 5.0KCOILS output, window length 21
[ ]jp_ux0ghTO.coilseq.lupas_282015-04-17 16:30 5.0KCOILS output, window length 28
[ ]jp_ux0ghTO.concise2015-04-17 16:30 201KPrediction: coiled-coil, solvent, alignment
[ ]jp_ux0ghTO.concise.blc2015-04-17 16:30 103KBLC format prediction and alignment data
[ ]jp_ux0ghTO.concise.fasta2015-04-17 16:30 104KPrediction: coiled-coil, solvent, alignment
[ ]jp_ux0ghTO.concise.pdf2015-04-17 16:31 710KPDF prediction and alignment data
[ ]jp_ux0ghTO.concise.ps2015-04-17 16:30 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_ux0ghTO.fasta2015-04-17 16:26 134 Input query sequence in FASTA format
[ ]jp_ux0ghTO.full_MSA.fasta2015-04-17 16:30 702KFull MSA before JPred filters in FASTA
[TXT]jp_ux0ghTO.full_MSA.fasta.noGaps.html2015-04-17 16:31 230KFull MSA before JPred filters in FASTA
[TXT]jp_ux0ghTO.full_MSA.fasta.withGaps.html2015-04-17 16:31 2.7MFull MSA before JPred filters in FASTA
[ ]jp_ux0ghTO.hmm2015-04-17 16:30 23KHHMer2 profile of the alignment
[TXT]jp_ux0ghTO.html2015-04-17 16:30 262KHTML prediction and alignment data
[ ]jp_ux0ghTO.input2015-04-17 16:04 127 Raw input data for analysis
[ ]jp_ux0ghTO.jalview2015-04-17 16:30 3.3KJalview annotation file for alignment
[ ]jp_ux0ghTO.jnet2015-04-17 16:30 4.4KJnet secondary structure output
[TXT]jp_ux0ghTO.profile2015-04-17 16:28 19KPSIBLAST profile from alignment
[ ]jp_ux0ghTO.pssm2015-04-17 16:30 26KPSIBLAST PSSM for Jnet
[TXT]jp_ux0ghTO.results.html2016-02-15 12:17 57KJPred results page
[TXT]jp_ux0ghTO.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ux0ghTO.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ux0ghTO.seq2015-04-17 16:04 134 Sequence data file
[TXT]jp_ux0ghTO.simple.html2015-04-17 16:30 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ux0ghTO.svg.html2015-04-17 16:31 49KJalview SVG summary of results
[ ]jp_ux0ghTO.tar.gz2015-04-17 16:31 1.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.