JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:27 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ozja_.name2015-04-17 17:53 0 Job name flag file
[ ]jp_96sX0kb.align2015-04-17 19:27 28KPSIBLAST alignment in FASTA format
[TXT]jp_96sX0kb.als2015-04-17 19:27 2.1KAlscript command file for PS/PDF output
[ ]jp_96sX0kb.blast.gz2015-04-17 19:27 317KCompressed PSIBLAST output file
[TXT]jp_96sX0kb.coils.csv2015-04-17 19:27 786 COILS output in CSV format
[ ]jp_96sX0kb.coilseq.lupas_142015-04-17 19:27 5.3KCOILS output, window length 14
[ ]jp_96sX0kb.coilseq.lupas_212015-04-17 19:27 5.3KCOILS output, window length 21
[ ]jp_96sX0kb.coilseq.lupas_282015-04-17 19:27 5.3KCOILS output, window length 28
[ ]jp_96sX0kb.concise2015-04-17 19:27 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_96sX0kb.concise.blc2015-04-17 19:27 29KBLC format prediction and alignment data
[ ]jp_96sX0kb.concise.fasta2015-04-17 19:27 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_96sX0kb.concise.pdf2015-04-17 19:27 187KPDF prediction and alignment data
[ ]jp_96sX0kb.concise.ps2015-04-17 19:27 3.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_96sX0kb.fasta2015-04-17 19:25 140 Input query sequence in FASTA format
[ ]jp_96sX0kb.full_MSA.fasta2015-04-17 19:27 559KFull MSA before JPred filters in FASTA
[TXT]jp_96sX0kb.full_MSA.fasta.noGaps.html2015-04-17 19:27 188KFull MSA before JPred filters in FASTA
[TXT]jp_96sX0kb.full_MSA.fasta.withGaps.html2015-04-17 19:27 1.9MFull MSA before JPred filters in FASTA
[ ]jp_96sX0kb.hmm2015-04-17 19:27 24KHHMer2 profile of the alignment
[TXT]jp_96sX0kb.html2015-04-17 19:27 77KHTML prediction and alignment data
[ ]jp_96sX0kb.input2015-04-17 17:53 133 Raw input data for analysis
[ ]jp_96sX0kb.jalview2015-04-17 19:27 3.3KJalview annotation file for alignment
[ ]jp_96sX0kb.jnet2015-04-17 19:27 4.7KJnet secondary structure output
[TXT]jp_96sX0kb.profile2015-04-17 19:26 20KPSIBLAST profile from alignment
[ ]jp_96sX0kb.pssm2015-04-17 19:27 27KPSIBLAST PSSM for Jnet
[TXT]jp_96sX0kb.results.html2016-02-15 12:18 59KJPred results page
[TXT]jp_96sX0kb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_96sX0kb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_96sX0kb.seq2015-04-17 17:53 140 Sequence data file
[TXT]jp_96sX0kb.simple.html2015-04-17 19:27 1.2KBrief HTML: sequence and prediction only
[TXT]jp_96sX0kb.svg.html2015-04-17 19:27 51KJalview SVG summary of results
[ ]jp_96sX0kb.tar.gz2015-04-17 19:27 686KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.