JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:30 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pl3a_.name2015-04-17 16:20 0 Job name flag file
[ ]jp_YyzYGkJ.align2015-04-17 17:30 100KPSIBLAST alignment in FASTA format
[TXT]jp_YyzYGkJ.als2015-04-17 17:30 3.3KAlscript command file for PS/PDF output
[ ]jp_YyzYGkJ.blast.gz2015-04-17 17:29 409KCompressed PSIBLAST output file
[TXT]jp_YyzYGkJ.coils.csv2015-04-17 17:30 1.1KCOILS output in CSV format
[ ]jp_YyzYGkJ.coilseq.lupas_142015-04-17 17:30 7.8KCOILS output, window length 14
[ ]jp_YyzYGkJ.coilseq.lupas_212015-04-17 17:30 7.8KCOILS output, window length 21
[ ]jp_YyzYGkJ.coilseq.lupas_282015-04-17 17:30 7.8KCOILS output, window length 28
[ ]jp_YyzYGkJ.concise2015-04-17 17:30 201KPrediction: coiled-coil, solvent, alignment
[ ]jp_YyzYGkJ.concise.blc2015-04-17 17:30 102KBLC format prediction and alignment data
[ ]jp_YyzYGkJ.concise.fasta2015-04-17 17:30 102KPrediction: coiled-coil, solvent, alignment
[ ]jp_YyzYGkJ.concise.pdf2015-04-17 17:30 646KPDF prediction and alignment data
[ ]jp_YyzYGkJ.concise.ps2015-04-17 17:30 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_YyzYGkJ.fasta2015-04-17 16:48 201 Input query sequence in FASTA format
[ ]jp_YyzYGkJ.full_MSA.fasta2015-04-17 17:30 788KFull MSA before JPred filters in FASTA
[TXT]jp_YyzYGkJ.full_MSA.fasta.noGaps.html2015-04-17 17:30 209KFull MSA before JPred filters in FASTA
[TXT]jp_YyzYGkJ.full_MSA.fasta.withGaps.html2015-04-17 17:30 3.2MFull MSA before JPred filters in FASTA
[ ]jp_YyzYGkJ.hmm2015-04-17 17:30 35KHHMer2 profile of the alignment
[TXT]jp_YyzYGkJ.html2015-04-17 17:30 212KHTML prediction and alignment data
[ ]jp_YyzYGkJ.input2015-04-17 16:20 193 Raw input data for analysis
[ ]jp_YyzYGkJ.jalview2015-04-17 17:30 4.5KJalview annotation file for alignment
[ ]jp_YyzYGkJ.jnet2015-04-17 17:30 6.8KJnet secondary structure output
[TXT]jp_YyzYGkJ.profile2015-04-17 17:18 30KPSIBLAST profile from alignment
[ ]jp_YyzYGkJ.pssm2015-04-17 17:30 40KPSIBLAST PSSM for Jnet
[TXT]jp_YyzYGkJ.results.html2016-02-15 12:18 82KJPred results page
[TXT]jp_YyzYGkJ.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_YyzYGkJ.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_YyzYGkJ.seq2015-04-17 16:20 201 Sequence data file
[TXT]jp_YyzYGkJ.simple.html2015-04-17 17:30 1.6KBrief HTML: sequence and prediction only
[TXT]jp_YyzYGkJ.svg.html2015-04-17 17:30 74KJalview SVG summary of results
[ ]jp_YyzYGkJ.tar.gz2015-04-17 17:30 1.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.