JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:34 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pz4a_.name2015-04-17 15:28 0 Job name flag file
[ ]jp_0O7ZDY4.align2015-04-17 15:34 98KPSIBLAST alignment in FASTA format
[TXT]jp_0O7ZDY4.als2015-04-17 15:34 2.4KAlscript command file for PS/PDF output
[ ]jp_0O7ZDY4.blast.gz2015-04-17 15:34 739KCompressed PSIBLAST output file
[TXT]jp_0O7ZDY4.coils.csv2015-04-17 15:34 708 COILS output in CSV format
[ ]jp_0O7ZDY4.coilseq.lupas_142015-04-17 15:34 4.7KCOILS output, window length 14
[ ]jp_0O7ZDY4.coilseq.lupas_212015-04-17 15:34 4.7KCOILS output, window length 21
[ ]jp_0O7ZDY4.coilseq.lupas_282015-04-17 15:34 4.7KCOILS output, window length 28
[ ]jp_0O7ZDY4.concise2015-04-17 15:34 191KPrediction: coiled-coil, solvent, alignment
[ ]jp_0O7ZDY4.concise.blc2015-04-17 15:34 99KBLC format prediction and alignment data
[ ]jp_0O7ZDY4.concise.fasta2015-04-17 15:34 99KPrediction: coiled-coil, solvent, alignment
[ ]jp_0O7ZDY4.concise.pdf2015-04-17 15:34 620KPDF prediction and alignment data
[ ]jp_0O7ZDY4.concise.ps2015-04-17 15:34 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_0O7ZDY4.fasta2015-04-17 15:30 127 Input query sequence in FASTA format
[ ]jp_0O7ZDY4.full_MSA.fasta2015-04-17 15:34 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_0O7ZDY4.full_MSA.fasta.noGaps.html2015-04-17 15:34 512KFull MSA before JPred filters in FASTA
[TXT]jp_0O7ZDY4.full_MSA.fasta.withGaps.html2015-04-17 15:34 6.7MFull MSA before JPred filters in FASTA
[ ]jp_0O7ZDY4.hmm2015-04-17 15:34 21KHHMer2 profile of the alignment
[TXT]jp_0O7ZDY4.html2015-04-17 15:34 255KHTML prediction and alignment data
[ ]jp_0O7ZDY4.input2015-04-17 15:28 120 Raw input data for analysis
[ ]jp_0O7ZDY4.jalview2015-04-17 15:34 3.1KJalview annotation file for alignment
[ ]jp_0O7ZDY4.jnet2015-04-17 15:34 4.2KJnet secondary structure output
[TXT]jp_0O7ZDY4.profile2015-04-17 15:33 18KPSIBLAST profile from alignment
[ ]jp_0O7ZDY4.pssm2015-04-17 15:34 24KPSIBLAST PSSM for Jnet
[TXT]jp_0O7ZDY4.results.html2016-02-15 12:18 56KJPred results page
[TXT]jp_0O7ZDY4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_0O7ZDY4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_0O7ZDY4.seq2015-04-17 15:28 127 Sequence data file
[TXT]jp_0O7ZDY4.simple.html2015-04-17 15:34 1.3KBrief HTML: sequence and prediction only
[TXT]jp_0O7ZDY4.svg.html2015-04-17 15:34 48KJalview SVG summary of results
[ ]jp_0O7ZDY4.tar.gz2015-04-17 15:34 2.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.