JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:32 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1q0qa1.name2015-04-17 16:05 0 Job name flag file
[ ]jp_Bpuo0Cg.align2015-04-17 16:32 97KPSIBLAST alignment in FASTA format
[TXT]jp_Bpuo0Cg.als2015-04-17 16:32 1.9KAlscript command file for PS/PDF output
[ ]jp_Bpuo0Cg.blast.gz2015-04-17 16:31 1.0MCompressed PSIBLAST output file
[TXT]jp_Bpuo0Cg.coils.csv2015-04-17 16:32 618 COILS output in CSV format
[ ]jp_Bpuo0Cg.coilseq.lupas_142015-04-17 16:32 4.1KCOILS output, window length 14
[ ]jp_Bpuo0Cg.coilseq.lupas_212015-04-17 16:32 4.1KCOILS output, window length 21
[ ]jp_Bpuo0Cg.coilseq.lupas_282015-04-17 16:32 4.1KCOILS output, window length 28
[ ]jp_Bpuo0Cg.concise2015-04-17 16:32 188KPrediction: coiled-coil, solvent, alignment
[ ]jp_Bpuo0Cg.concise.blc2015-04-17 16:32 97KBLC format prediction and alignment data
[ ]jp_Bpuo0Cg.concise.fasta2015-04-17 16:32 98KPrediction: coiled-coil, solvent, alignment
[ ]jp_Bpuo0Cg.concise.pdf2015-04-17 16:32 631KPDF prediction and alignment data
[ ]jp_Bpuo0Cg.concise.ps2015-04-17 16:32 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_Bpuo0Cg.fasta2015-04-17 16:28 112 Input query sequence in FASTA format
[ ]jp_Bpuo0Cg.full_MSA.fasta2015-04-17 16:32 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_Bpuo0Cg.full_MSA.fasta.noGaps.html2015-04-17 16:32 692KFull MSA before JPred filters in FASTA
[TXT]jp_Bpuo0Cg.full_MSA.fasta.withGaps.html2015-04-17 16:32 5.3MFull MSA before JPred filters in FASTA
[ ]jp_Bpuo0Cg.hmm2015-04-17 16:32 18KHHMer2 profile of the alignment
[TXT]jp_Bpuo0Cg.html2015-04-17 16:32 270KHTML prediction and alignment data
[ ]jp_Bpuo0Cg.input2015-04-17 16:05 105 Raw input data for analysis
[ ]jp_Bpuo0Cg.jalview2015-04-17 16:32 2.8KJalview annotation file for alignment
[ ]jp_Bpuo0Cg.jnet2015-04-17 16:32 3.7KJnet secondary structure output
[TXT]jp_Bpuo0Cg.profile2015-04-17 16:30 16KPSIBLAST profile from alignment
[ ]jp_Bpuo0Cg.pssm2015-04-17 16:32 21KPSIBLAST PSSM for Jnet
[TXT]jp_Bpuo0Cg.results.html2016-02-15 12:18 49KJPred results page
[TXT]jp_Bpuo0Cg.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Bpuo0Cg.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Bpuo0Cg.seq2015-04-17 16:05 112 Sequence data file
[TXT]jp_Bpuo0Cg.simple.html2015-04-17 16:32 1.2KBrief HTML: sequence and prediction only
[TXT]jp_Bpuo0Cg.svg.html2015-04-17 16:32 41KJalview SVG summary of results
[ ]jp_Bpuo0Cg.tar.gz2015-04-17 16:32 2.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.