JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:33 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1q9ua_.name2015-04-17 17:55 0 Job name flag file
[ ]jp_U0h18Lu.align2015-04-17 19:32 189KPSIBLAST alignment in FASTA format
[TXT]jp_U0h18Lu.als2015-04-17 19:32 2.8KAlscript command file for PS/PDF output
[ ]jp_U0h18Lu.blast.gz2015-04-17 19:31 684KCompressed PSIBLAST output file
[TXT]jp_U0h18Lu.coils.csv2015-04-17 19:32 798 COILS output in CSV format
[ ]jp_U0h18Lu.coilseq.lupas_142015-04-17 19:32 5.4KCOILS output, window length 14
[ ]jp_U0h18Lu.coilseq.lupas_212015-04-17 19:32 5.4KCOILS output, window length 21
[ ]jp_U0h18Lu.coilseq.lupas_282015-04-17 19:32 5.4KCOILS output, window length 28
[ ]jp_U0h18Lu.concise2015-04-17 19:32 366KPrediction: coiled-coil, solvent, alignment
[ ]jp_U0h18Lu.concise.blc2015-04-17 19:32 189KBLC format prediction and alignment data
[ ]jp_U0h18Lu.concise.fasta2015-04-17 19:32 191KPrediction: coiled-coil, solvent, alignment
[ ]jp_U0h18Lu.concise.pdf2015-04-17 19:33 1.3MPDF prediction and alignment data
[ ]jp_U0h18Lu.concise.ps2015-04-17 19:32 22MPrediction: coiled-coil, solvent, alignment
[ ]jp_U0h18Lu.fasta2015-04-17 19:27 142 Input query sequence in FASTA format
[ ]jp_U0h18Lu.full_MSA.fasta2015-04-17 19:31 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_U0h18Lu.full_MSA.fasta.noGaps.html2015-04-17 19:33 442KFull MSA before JPred filters in FASTA
[TXT]jp_U0h18Lu.full_MSA.fasta.withGaps.html2015-04-17 19:33 6.0MFull MSA before JPred filters in FASTA
[ ]jp_U0h18Lu.hmm2015-04-17 19:32 24KHHMer2 profile of the alignment
[TXT]jp_U0h18Lu.html2015-04-17 19:32 455KHTML prediction and alignment data
[ ]jp_U0h18Lu.input2015-04-17 17:55 135 Raw input data for analysis
[ ]jp_U0h18Lu.jalview2015-04-17 19:32 3.5KJalview annotation file for alignment
[ ]jp_U0h18Lu.jnet2015-04-17 19:32 4.7KJnet secondary structure output
[TXT]jp_U0h18Lu.profile2015-04-17 19:29 21KPSIBLAST profile from alignment
[ ]jp_U0h18Lu.pssm2015-04-17 19:32 28KPSIBLAST PSSM for Jnet
[TXT]jp_U0h18Lu.results.html2016-02-15 12:18 62KJPred results page
[TXT]jp_U0h18Lu.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_U0h18Lu.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_U0h18Lu.seq2015-04-17 17:55 142 Sequence data file
[TXT]jp_U0h18Lu.simple.html2015-04-17 19:32 1.4KBrief HTML: sequence and prediction only
[TXT]jp_U0h18Lu.svg.html2015-04-17 19:33 54KJalview SVG summary of results
[ ]jp_U0h18Lu.tar.gz2015-04-17 19:33 2.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.