JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rssa_.name2015-04-17 19:10 0 Job name flag file
[ ]jp_G6DBx6n.align2015-04-17 21:36 107KPSIBLAST alignment in FASTA format
[TXT]jp_G6DBx6n.als2015-04-17 21:36 2.5KAlscript command file for PS/PDF output
[ ]jp_G6DBx6n.blast.gz2015-04-17 21:35 1.5MCompressed PSIBLAST output file
[TXT]jp_G6DBx6n.coils.csv2015-04-17 21:36 870 COILS output in CSV format
[ ]jp_G6DBx6n.coilseq.lupas_142015-04-17 21:36 5.9KCOILS output, window length 14
[ ]jp_G6DBx6n.coilseq.lupas_212015-04-17 21:36 5.9KCOILS output, window length 21
[ ]jp_G6DBx6n.coilseq.lupas_282015-04-17 21:36 5.9KCOILS output, window length 28
[ ]jp_G6DBx6n.concise2015-04-17 21:36 210KPrediction: coiled-coil, solvent, alignment
[ ]jp_G6DBx6n.concise.blc2015-04-17 21:36 107KBLC format prediction and alignment data
[ ]jp_G6DBx6n.concise.fasta2015-04-17 21:36 108KPrediction: coiled-coil, solvent, alignment
[ ]jp_G6DBx6n.concise.pdf2015-04-17 21:36 700KPDF prediction and alignment data
[ ]jp_G6DBx6n.concise.ps2015-04-17 21:36 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_G6DBx6n.fasta2015-04-17 21:33 154 Input query sequence in FASTA format
[ ]jp_G6DBx6n.full_MSA.fasta2015-04-17 21:35 2.8MFull MSA before JPred filters in FASTA
[TXT]jp_G6DBx6n.full_MSA.fasta.noGaps.html2015-04-17 21:36 720KFull MSA before JPred filters in FASTA
[TXT]jp_G6DBx6n.full_MSA.fasta.withGaps.html2015-04-17 21:36 9.2MFull MSA before JPred filters in FASTA
[ ]jp_G6DBx6n.hmm2015-04-17 21:36 26KHHMer2 profile of the alignment
[TXT]jp_G6DBx6n.html2015-04-17 21:36 254KHTML prediction and alignment data
[ ]jp_G6DBx6n.input2015-04-17 19:10 147 Raw input data for analysis
[ ]jp_G6DBx6n.jalview2015-04-17 21:36 3.7KJalview annotation file for alignment
[ ]jp_G6DBx6n.jnet2015-04-17 21:36 5.2KJnet secondary structure output
[TXT]jp_G6DBx6n.profile2015-04-17 21:35 23KPSIBLAST profile from alignment
[ ]jp_G6DBx6n.pssm2015-04-17 21:36 30KPSIBLAST PSSM for Jnet
[TXT]jp_G6DBx6n.results.html2016-02-15 12:18 66KJPred results page
[TXT]jp_G6DBx6n.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_G6DBx6n.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_G6DBx6n.seq2015-04-17 19:10 154 Sequence data file
[TXT]jp_G6DBx6n.simple.html2015-04-17 21:36 1.4KBrief HTML: sequence and prediction only
[TXT]jp_G6DBx6n.svg.html2015-04-17 21:36 58KJalview SVG summary of results
[ ]jp_G6DBx6n.tar.gz2015-04-17 21:36 3.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.