JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:31 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rwha2.name2015-04-17 16:43 0 Job name flag file
[ ]jp_q7oh6DS.align2015-04-17 17:31 59KPSIBLAST alignment in FASTA format
[TXT]jp_q7oh6DS.als2015-04-17 17:31 2.9KAlscript command file for PS/PDF output
[ ]jp_q7oh6DS.blast.gz2015-04-17 17:30 191KCompressed PSIBLAST output file
[TXT]jp_q7oh6DS.coils.csv2015-04-17 17:31 708 COILS output in CSV format
[ ]jp_q7oh6DS.coilseq.lupas_142015-04-17 17:31 4.7KCOILS output, window length 14
[ ]jp_q7oh6DS.coilseq.lupas_212015-04-17 17:31 4.7KCOILS output, window length 21
[ ]jp_q7oh6DS.coilseq.lupas_282015-04-17 17:31 4.7KCOILS output, window length 28
[ ]jp_q7oh6DS.concise2015-04-17 17:31 117KPrediction: coiled-coil, solvent, alignment
[ ]jp_q7oh6DS.concise.blc2015-04-17 17:31 60KBLC format prediction and alignment data
[ ]jp_q7oh6DS.concise.fasta2015-04-17 17:31 60KPrediction: coiled-coil, solvent, alignment
[ ]jp_q7oh6DS.concise.pdf2015-04-17 17:31 391KPDF prediction and alignment data
[ ]jp_q7oh6DS.concise.ps2015-04-17 17:31 6.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_q7oh6DS.fasta2015-04-17 17:27 127 Input query sequence in FASTA format
[ ]jp_q7oh6DS.full_MSA.fasta2015-04-17 17:30 402KFull MSA before JPred filters in FASTA
[TXT]jp_q7oh6DS.full_MSA.fasta.noGaps.html2015-04-17 17:31 128KFull MSA before JPred filters in FASTA
[TXT]jp_q7oh6DS.full_MSA.fasta.withGaps.html2015-04-17 17:31 1.5MFull MSA before JPred filters in FASTA
[ ]jp_q7oh6DS.hmm2015-04-17 17:31 21KHHMer2 profile of the alignment
[TXT]jp_q7oh6DS.html2015-04-17 17:31 158KHTML prediction and alignment data
[ ]jp_q7oh6DS.input2015-04-17 16:43 120 Raw input data for analysis
[ ]jp_q7oh6DS.jalview2015-04-17 17:31 3.1KJalview annotation file for alignment
[ ]jp_q7oh6DS.jnet2015-04-17 17:31 4.2KJnet secondary structure output
[TXT]jp_q7oh6DS.profile2015-04-17 17:29 18KPSIBLAST profile from alignment
[ ]jp_q7oh6DS.pssm2015-04-17 17:31 24KPSIBLAST PSSM for Jnet
[TXT]jp_q7oh6DS.results.html2016-02-15 12:18 55KJPred results page
[TXT]jp_q7oh6DS.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_q7oh6DS.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_q7oh6DS.seq2015-04-17 16:43 127 Sequence data file
[TXT]jp_q7oh6DS.simple.html2015-04-17 17:31 1.4KBrief HTML: sequence and prediction only
[TXT]jp_q7oh6DS.svg.html2015-04-17 17:31 47KJalview SVG summary of results
[ ]jp_q7oh6DS.tar.gz2015-04-17 17:31 866KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.