JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:35 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1seia_.name2015-04-17 15:29 0 Job name flag file
[ ]jp_ZTGx_H3.align2015-04-17 15:35 95KPSIBLAST alignment in FASTA format
[TXT]jp_ZTGx_H3.als2015-04-17 15:35 2.9KAlscript command file for PS/PDF output
[ ]jp_ZTGx_H3.blast.gz2015-04-17 15:34 1.8MCompressed PSIBLAST output file
[TXT]jp_ZTGx_H3.coils.csv2015-04-17 15:35 810 COILS output in CSV format
[ ]jp_ZTGx_H3.coilseq.lupas_142015-04-17 15:35 5.5KCOILS output, window length 14
[ ]jp_ZTGx_H3.coilseq.lupas_212015-04-17 15:35 5.5KCOILS output, window length 21
[ ]jp_ZTGx_H3.coilseq.lupas_282015-04-17 15:35 5.5KCOILS output, window length 28
[ ]jp_ZTGx_H3.concise2015-04-17 15:35 187KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZTGx_H3.concise.blc2015-04-17 15:35 95KBLC format prediction and alignment data
[ ]jp_ZTGx_H3.concise.fasta2015-04-17 15:35 96KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZTGx_H3.concise.pdf2015-04-17 15:35 646KPDF prediction and alignment data
[ ]jp_ZTGx_H3.concise.ps2015-04-17 15:35 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_ZTGx_H3.fasta2015-04-17 15:32 144 Input query sequence in FASTA format
[ ]jp_ZTGx_H3.full_MSA.fasta2015-04-17 15:35 3.9MFull MSA before JPred filters in FASTA
[TXT]jp_ZTGx_H3.full_MSA.fasta.noGaps.html2015-04-17 15:35 796KFull MSA before JPred filters in FASTA
[TXT]jp_ZTGx_H3.full_MSA.fasta.withGaps.html2015-04-17 15:35 11MFull MSA before JPred filters in FASTA
[ ]jp_ZTGx_H3.hmm2015-04-17 15:35 24KHHMer2 profile of the alignment
[TXT]jp_ZTGx_H3.html2015-04-17 15:35 232KHTML prediction and alignment data
[ ]jp_ZTGx_H3.input2015-04-17 15:29 137 Raw input data for analysis
[ ]jp_ZTGx_H3.jalview2015-04-17 15:35 3.4KJalview annotation file for alignment
[ ]jp_ZTGx_H3.jnet2015-04-17 15:35 4.8KJnet secondary structure output
[TXT]jp_ZTGx_H3.profile2015-04-17 15:34 21KPSIBLAST profile from alignment
[ ]jp_ZTGx_H3.pssm2015-04-17 15:35 28KPSIBLAST PSSM for Jnet
[TXT]jp_ZTGx_H3.results.html2016-02-15 12:18 63KJPred results page
[TXT]jp_ZTGx_H3.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ZTGx_H3.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ZTGx_H3.seq2015-04-17 15:29 144 Sequence data file
[TXT]jp_ZTGx_H3.simple.html2015-04-17 15:35 1.4KBrief HTML: sequence and prediction only
[TXT]jp_ZTGx_H3.svg.html2015-04-17 15:35 55KJalview SVG summary of results
[ ]jp_ZTGx_H3.tar.gz2015-04-17 15:35 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.