JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:19 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1su8a_.name2015-04-17 16:33 0 Job name flag file
[ ]jp_0A78ba7.align2015-04-17 17:17 663KPSIBLAST alignment in FASTA format
[TXT]jp_0A78ba7.als2015-04-17 17:18 8.0KAlscript command file for PS/PDF output
[ ]jp_0A78ba7.blast.gz2015-04-17 17:16 3.0MCompressed PSIBLAST output file
[TXT]jp_0A78ba7.coils.csv2015-04-17 17:17 3.7KCOILS output in CSV format
[ ]jp_0A78ba7.coilseq.lupas_142015-04-17 17:17 27KCOILS output, window length 14
[ ]jp_0A78ba7.coilseq.lupas_212015-04-17 17:17 27KCOILS output, window length 21
[ ]jp_0A78ba7.coilseq.lupas_282015-04-17 17:17 27KCOILS output, window length 28
[ ]jp_0A78ba7.concise2015-04-17 17:17 1.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_0A78ba7.concise.blc2015-04-17 17:18 663KBLC format prediction and alignment data
[ ]jp_0A78ba7.concise.fasta2015-04-17 17:17 669KPrediction: coiled-coil, solvent, alignment
[ ]jp_0A78ba7.concise.pdf2015-04-17 17:19 4.2MPDF prediction and alignment data
[ ]jp_0A78ba7.concise.ps2015-04-17 17:18 83MPrediction: coiled-coil, solvent, alignment
[ ]jp_0A78ba7.fasta2015-04-17 17:10 654 Input query sequence in FASTA format
[ ]jp_0A78ba7.full_MSA.fasta2015-04-17 17:16 8.1MFull MSA before JPred filters in FASTA
[TXT]jp_0A78ba7.full_MSA.fasta.noGaps.html2015-04-17 17:19 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_0A78ba7.full_MSA.fasta.withGaps.html2015-04-17 17:19 25MFull MSA before JPred filters in FASTA
[ ]jp_0A78ba7.hmm2015-04-17 17:17 119KHHMer2 profile of the alignment
[TXT]jp_0A78ba7.html2015-04-17 17:17 915KHTML prediction and alignment data
[ ]jp_0A78ba7.input2015-04-17 16:33 640 Raw input data for analysis
[ ]jp_0A78ba7.jalview2015-04-17 17:17 14KJalview annotation file for alignment
[ ]jp_0A78ba7.jnet2015-04-17 17:17 23KJnet secondary structure output
[TXT]jp_0A78ba7.profile2015-04-17 17:14 101KPSIBLAST profile from alignment
[ ]jp_0A78ba7.pssm2015-04-17 17:17 136KPSIBLAST PSSM for Jnet
[TXT]jp_0A78ba7.results.html2016-02-15 12:18 262KJPred results page
[TXT]jp_0A78ba7.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_0A78ba7.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_0A78ba7.seq2015-04-17 16:33 654 Sequence data file
[TXT]jp_0A78ba7.simple.html2015-04-17 17:17 3.2KBrief HTML: sequence and prediction only
[TXT]jp_0A78ba7.svg.html2015-04-17 17:19 254KJalview SVG summary of results
[ ]jp_0A78ba7.tar.gz2015-04-17 17:19 10MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.