JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1t1ea2.name2015-04-17 18:32 0 Job name flag file
[ ]jp_QHwL9VO.align2015-04-17 20:35 255KPSIBLAST alignment in FASTA format
[TXT]jp_QHwL9VO.als2015-04-17 20:36 2.9KAlscript command file for PS/PDF output
[ ]jp_QHwL9VO.blast.gz2015-04-17 20:34 837KCompressed PSIBLAST output file
[TXT]jp_QHwL9VO.coils.csv2015-04-17 20:35 1.1KCOILS output in CSV format
[ ]jp_QHwL9VO.coilseq.lupas_142015-04-17 20:35 7.5KCOILS output, window length 14
[ ]jp_QHwL9VO.coilseq.lupas_212015-04-17 20:35 7.5KCOILS output, window length 21
[ ]jp_QHwL9VO.coilseq.lupas_282015-04-17 20:35 7.5KCOILS output, window length 28
[ ]jp_QHwL9VO.concise2015-04-17 20:35 498KPrediction: coiled-coil, solvent, alignment
[ ]jp_QHwL9VO.concise.blc2015-04-17 20:35 254KBLC format prediction and alignment data
[ ]jp_QHwL9VO.concise.fasta2015-04-17 20:35 257KPrediction: coiled-coil, solvent, alignment
[ ]jp_QHwL9VO.concise.pdf2015-04-17 20:36 1.7MPDF prediction and alignment data
[ ]jp_QHwL9VO.concise.ps2015-04-17 20:36 30MPrediction: coiled-coil, solvent, alignment
[ ]jp_QHwL9VO.fasta2015-04-17 20:28 194 Input query sequence in FASTA format
[ ]jp_QHwL9VO.full_MSA.fasta2015-04-17 20:34 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_QHwL9VO.full_MSA.fasta.noGaps.html2015-04-17 20:36 473KFull MSA before JPred filters in FASTA
[TXT]jp_QHwL9VO.full_MSA.fasta.withGaps.html2015-04-17 20:36 7.5MFull MSA before JPred filters in FASTA
[ ]jp_QHwL9VO.hmm2015-04-17 20:35 34KHHMer2 profile of the alignment
[TXT]jp_QHwL9VO.html2015-04-17 20:35 519KHTML prediction and alignment data
[ ]jp_QHwL9VO.input2015-04-17 18:32 186 Raw input data for analysis
[ ]jp_QHwL9VO.jalview2015-04-17 20:35 4.3KJalview annotation file for alignment
[ ]jp_QHwL9VO.jnet2015-04-17 20:35 6.6KJnet secondary structure output
[TXT]jp_QHwL9VO.profile2015-04-17 20:33 29KPSIBLAST profile from alignment
[ ]jp_QHwL9VO.pssm2015-04-17 20:35 38KPSIBLAST PSSM for Jnet
[TXT]jp_QHwL9VO.results.html2016-02-15 12:18 80KJPred results page
[TXT]jp_QHwL9VO.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_QHwL9VO.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_QHwL9VO.seq2015-04-17 18:32 194 Sequence data file
[TXT]jp_QHwL9VO.simple.html2015-04-17 20:35 1.5KBrief HTML: sequence and prediction only
[TXT]jp_QHwL9VO.svg.html2015-04-17 20:36 72KJalview SVG summary of results
[ ]jp_QHwL9VO.tar.gz2015-04-17 20:36 3.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.