JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:24 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1tfea_.name2015-04-17 16:37 0 Job name flag file
[ ]jp_pteG5cI.align2015-04-17 17:23 132KPSIBLAST alignment in FASTA format
[TXT]jp_pteG5cI.als2015-04-17 17:23 2.2KAlscript command file for PS/PDF output
[ ]jp_pteG5cI.blast.gz2015-04-17 17:22 3.4MCompressed PSIBLAST output file
[TXT]jp_pteG5cI.coils.csv2015-04-17 17:23 882 COILS output in CSV format
[ ]jp_pteG5cI.coilseq.lupas_142015-04-17 17:23 6.0KCOILS output, window length 14
[ ]jp_pteG5cI.coilseq.lupas_212015-04-17 17:23 6.0KCOILS output, window length 21
[ ]jp_pteG5cI.coilseq.lupas_282015-04-17 17:23 6.0KCOILS output, window length 28
[ ]jp_pteG5cI.concise2015-04-17 17:23 260KPrediction: coiled-coil, solvent, alignment
[ ]jp_pteG5cI.concise.blc2015-04-17 17:23 133KBLC format prediction and alignment data
[ ]jp_pteG5cI.concise.fasta2015-04-17 17:23 134KPrediction: coiled-coil, solvent, alignment
[ ]jp_pteG5cI.concise.pdf2015-04-17 17:23 855KPDF prediction and alignment data
[ ]jp_pteG5cI.concise.ps2015-04-17 17:23 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_pteG5cI.fasta2015-04-17 17:19 156 Input query sequence in FASTA format
[ ]jp_pteG5cI.full_MSA.fasta2015-04-17 17:23 7.6MFull MSA before JPred filters in FASTA
[TXT]jp_pteG5cI.full_MSA.fasta.noGaps.html2015-04-17 17:24 971KFull MSA before JPred filters in FASTA
[TXT]jp_pteG5cI.full_MSA.fasta.withGaps.html2015-04-17 17:24 17MFull MSA before JPred filters in FASTA
[ ]jp_pteG5cI.hmm2015-04-17 17:23 27KHHMer2 profile of the alignment
[TXT]jp_pteG5cI.html2015-04-17 17:23 308KHTML prediction and alignment data
[ ]jp_pteG5cI.input2015-04-17 16:37 149 Raw input data for analysis
[ ]jp_pteG5cI.jalview2015-04-17 17:23 3.7KJalview annotation file for alignment
[ ]jp_pteG5cI.jnet2015-04-17 17:23 5.2KJnet secondary structure output
[TXT]jp_pteG5cI.profile2015-04-17 17:21 23KPSIBLAST profile from alignment
[ ]jp_pteG5cI.pssm2015-04-17 17:23 31KPSIBLAST PSSM for Jnet
[TXT]jp_pteG5cI.results.html2016-02-15 12:18 65KJPred results page
[TXT]jp_pteG5cI.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_pteG5cI.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_pteG5cI.seq2015-04-17 16:37 156 Sequence data file
[TXT]jp_pteG5cI.simple.html2015-04-17 17:23 1.3KBrief HTML: sequence and prediction only
[TXT]jp_pteG5cI.svg.html2015-04-17 17:24 57KJalview SVG summary of results
[ ]jp_pteG5cI.tar.gz2015-04-17 17:24 5.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.