A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:41 | 4.7K | JPred server log file |
| README | 2016-02-15 12:18 | 2.1K | Results file descriptions |
| d1u5pa1.name | 2015-04-17 18:33 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_dtUFkEo.align | 2015-04-17 20:40 | 87K | PSIBLAST alignment in FASTA format |
| jp_dtUFkEo.als | 2015-04-17 20:40 | 1.6K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_dtUFkEo.blast.gz | 2015-04-17 20:36 | 11M | Compressed PSIBLAST output file |
| jp_dtUFkEo.coils.csv | 2015-04-17 20:40 | 690 | COILS output in CSV format |
| jp_dtUFkEo.coilseq.lupas_14 | 2015-04-17 20:40 | 4.6K | COILS output, window length 14 |
| jp_dtUFkEo.coilseq.lupas_21 | 2015-04-17 20:40 | 4.6K | COILS output, window length 21 |
| jp_dtUFkEo.coilseq.lupas_28 | 2015-04-17 20:40 | 4.6K | COILS output, window length 28 |
| jp_dtUFkEo.concise | 2015-04-17 20:40 | 169K | Prediction: coiled-coil, solvent, alignment |
| jp_dtUFkEo.concise.blc | 2015-04-17 20:40 | 87K | BLC format prediction and alignment data |
| jp_dtUFkEo.concise.fasta | 2015-04-17 20:40 | 88K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_dtUFkEo.concise.pdf | 2015-04-17 20:40 | 578K | PDF prediction and alignment data |
| jp_dtUFkEo.concise.ps | 2015-04-17 20:40 | 10M | Prediction: coiled-coil, solvent, alignment |
| jp_dtUFkEo.fasta | 2015-04-17 20:30 | 124 | Input query sequence in FASTA format |
| jp_dtUFkEo.full_MSA.fasta | 2015-04-17 20:39 | 36M | Full MSA before JPred filters in FASTA |
| jp_dtUFkEo.full_MSA.fasta.noGaps.html | 2015-04-17 20:41 | 4.3M | Full MSA before JPred filters in FASTA |
| jp_dtUFkEo.full_MSA.fasta.withGaps.html | 2015-04-17 20:41 | 83M | Full MSA before JPred filters in FASTA |
| jp_dtUFkEo.hmm | 2015-04-17 20:40 | 21K | HHMer2 profile of the alignment |
| jp_dtUFkEo.html | 2015-04-17 20:40 | 233K | HTML prediction and alignment data |
| jp_dtUFkEo.input | 2015-04-17 18:33 | 117 | Raw input data for analysis |
| jp_dtUFkEo.jalview | 2015-04-17 20:40 | 3.1K | Jalview annotation file for alignment |
| jp_dtUFkEo.jnet | 2015-04-17 20:40 | 4.1K | Jnet secondary structure output |
| jp_dtUFkEo.profile | 2015-04-17 20:34 | 18K | PSIBLAST profile from alignment |
| jp_dtUFkEo.pssm | 2015-04-17 20:40 | 24K | PSIBLAST PSSM for Jnet |
| jp_dtUFkEo.results.html | 2016-02-15 12:18 | 51K | JPred results page |
| jp_dtUFkEo.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_dtUFkEo.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_dtUFkEo.seq | 2015-04-17 18:33 | 124 | Sequence data file |
| jp_dtUFkEo.simple.html | 2015-04-17 20:40 | 1.1K | Brief HTML: sequence and prediction only |
![[TXT]](jp_dtUFkEo.svg.html) | jp_dtUFkEo.svg.html | 2015-04-17 20:41 | 43K | Jalview SVG summary of results |
| jp_dtUFkEo.tar.gz | 2015-04-17 20:41 | 20M | Archive containing complete results |
