JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ucsa_.name2015-04-17 17:58 0 Job name flag file
[ ]jp_oqvWWwj.align2015-04-17 19:36 43KPSIBLAST alignment in FASTA format
[TXT]jp_oqvWWwj.als2015-04-17 19:36 1.9KAlscript command file for PS/PDF output
[ ]jp_oqvWWwj.blast.gz2015-04-17 19:36 48KCompressed PSIBLAST output file
[TXT]jp_oqvWWwj.coils.csv2015-04-17 19:36 414 COILS output in CSV format
[ ]jp_oqvWWwj.coilseq.lupas_142015-04-17 19:36 2.7KCOILS output, window length 14
[ ]jp_oqvWWwj.coilseq.lupas_212015-04-17 19:36 2.7KCOILS output, window length 21
[ ]jp_oqvWWwj.coilseq.lupas_282015-04-17 19:36 2.7KCOILS output, window length 28
[ ]jp_oqvWWwj.concise2015-04-17 19:36 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_oqvWWwj.concise.blc2015-04-17 19:36 43KBLC format prediction and alignment data
[ ]jp_oqvWWwj.concise.fasta2015-04-17 19:36 43KPrediction: coiled-coil, solvent, alignment
[ ]jp_oqvWWwj.concise.pdf2015-04-17 19:36 252KPDF prediction and alignment data
[ ]jp_oqvWWwj.concise.ps2015-04-17 19:36 4.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_oqvWWwj.fasta2015-04-17 19:31 77 Input query sequence in FASTA format
[ ]jp_oqvWWwj.full_MSA.fasta2015-04-17 19:36 82KFull MSA before JPred filters in FASTA
[TXT]jp_oqvWWwj.full_MSA.fasta.noGaps.html2015-04-17 19:36 128KFull MSA before JPred filters in FASTA
[TXT]jp_oqvWWwj.full_MSA.fasta.withGaps.html2015-04-17 19:36 411KFull MSA before JPred filters in FASTA
[ ]jp_oqvWWwj.hmm2015-04-17 19:36 12KHHMer2 profile of the alignment
[TXT]jp_oqvWWwj.html2015-04-17 19:36 149KHTML prediction and alignment data
[ ]jp_oqvWWwj.input2015-04-17 17:58 71 Raw input data for analysis
[ ]jp_oqvWWwj.jalview2015-04-17 19:36 2.1KJalview annotation file for alignment
[ ]jp_oqvWWwj.jnet2015-04-17 19:36 2.4KJnet secondary structure output
[TXT]jp_oqvWWwj.profile2015-04-17 19:35 11KPSIBLAST profile from alignment
[ ]jp_oqvWWwj.pssm2015-04-17 19:36 14KPSIBLAST PSSM for Jnet
[TXT]jp_oqvWWwj.results.html2016-02-15 12:18 36KJPred results page
[TXT]jp_oqvWWwj.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_oqvWWwj.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_oqvWWwj.seq2015-04-17 17:58 77 Sequence data file
[TXT]jp_oqvWWwj.simple.html2015-04-17 19:36 1.1KBrief HTML: sequence and prediction only
[TXT]jp_oqvWWwj.svg.html2015-04-17 19:36 28KJalview SVG summary of results
[ ]jp_oqvWWwj.tar.gz2015-04-17 19:36 445KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.