JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1udxa3.name2015-04-17 16:08 0 Job name flag file
[ ]jp_urmcv_k.align2015-04-17 16:35 81KPSIBLAST alignment in FASTA format
[TXT]jp_urmcv_k.als2015-04-17 16:35 2.2KAlscript command file for PS/PDF output
[ ]jp_urmcv_k.blast.gz2015-04-17 16:34 237KCompressed PSIBLAST output file
[TXT]jp_urmcv_k.coils.csv2015-04-17 16:35 486 COILS output in CSV format
[ ]jp_urmcv_k.coilseq.lupas_142015-04-17 16:35 3.2KCOILS output, window length 14
[ ]jp_urmcv_k.coilseq.lupas_212015-04-17 16:35 3.2KCOILS output, window length 21
[ ]jp_urmcv_k.coilseq.lupas_282015-04-17 16:35 3.2KCOILS output, window length 28
[ ]jp_urmcv_k.concise2015-04-17 16:35 153KPrediction: coiled-coil, solvent, alignment
[ ]jp_urmcv_k.concise.blc2015-04-17 16:35 80KBLC format prediction and alignment data
[ ]jp_urmcv_k.concise.fasta2015-04-17 16:35 81KPrediction: coiled-coil, solvent, alignment
[ ]jp_urmcv_k.concise.pdf2015-04-17 16:35 473KPDF prediction and alignment data
[ ]jp_urmcv_k.concise.ps2015-04-17 16:35 8.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_urmcv_k.fasta2015-04-17 16:32 90 Input query sequence in FASTA format
[ ]jp_urmcv_k.full_MSA.fasta2015-04-17 16:34 279KFull MSA before JPred filters in FASTA
[TXT]jp_urmcv_k.full_MSA.fasta.noGaps.html2015-04-17 16:35 299KFull MSA before JPred filters in FASTA
[TXT]jp_urmcv_k.full_MSA.fasta.withGaps.html2015-04-17 16:35 1.4MFull MSA before JPred filters in FASTA
[ ]jp_urmcv_k.hmm2015-04-17 16:35 14KHHMer2 profile of the alignment
[TXT]jp_urmcv_k.html2015-04-17 16:35 254KHTML prediction and alignment data
[ ]jp_urmcv_k.input2015-04-17 16:08 83 Raw input data for analysis
[ ]jp_urmcv_k.jalview2015-04-17 16:35 2.4KJalview annotation file for alignment
[ ]jp_urmcv_k.jnet2015-04-17 16:35 2.9KJnet secondary structure output
[TXT]jp_urmcv_k.profile2015-04-17 16:34 13KPSIBLAST profile from alignment
[ ]jp_urmcv_k.pssm2015-04-17 16:35 16KPSIBLAST PSSM for Jnet
[TXT]jp_urmcv_k.results.html2016-02-15 12:18 42KJPred results page
[TXT]jp_urmcv_k.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_urmcv_k.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_urmcv_k.seq2015-04-17 16:08 90 Sequence data file
[TXT]jp_urmcv_k.simple.html2015-04-17 16:35 1.2KBrief HTML: sequence and prediction only
[TXT]jp_urmcv_k.svg.html2015-04-17 16:35 34KJalview SVG summary of results
[ ]jp_urmcv_k.tar.gz2015-04-17 16:36 1.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.