JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:43 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ux6a2.name2015-04-17 16:49 0 Job name flag file
[ ]jp_v1B88_y.align2015-04-17 17:43 106KPSIBLAST alignment in FASTA format
[TXT]jp_v1B88_y.als2015-04-17 17:43 1.2KAlscript command file for PS/PDF output
[ ]jp_v1B88_y.blast.gz2015-04-17 17:42 4.5MCompressed PSIBLAST output file
[TXT]jp_v1B88_y.coils.csv2015-04-17 17:43 774 COILS output in CSV format
[ ]jp_v1B88_y.coilseq.lupas_142015-04-17 17:43 5.2KCOILS output, window length 14
[ ]jp_v1B88_y.coilseq.lupas_212015-04-17 17:43 5.2KCOILS output, window length 21
[ ]jp_v1B88_y.coilseq.lupas_282015-04-17 17:43 5.2KCOILS output, window length 28
[ ]jp_v1B88_y.concise2015-04-17 17:43 207KPrediction: coiled-coil, solvent, alignment
[ ]jp_v1B88_y.concise.blc2015-04-17 17:43 106KBLC format prediction and alignment data
[ ]jp_v1B88_y.concise.fasta2015-04-17 17:43 107KPrediction: coiled-coil, solvent, alignment
[ ]jp_v1B88_y.concise.pdf2015-04-17 17:43 584KPDF prediction and alignment data
[ ]jp_v1B88_y.concise.ps2015-04-17 17:43 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_v1B88_y.fasta2015-04-17 17:39 138 Input query sequence in FASTA format
[ ]jp_v1B88_y.full_MSA.fasta2015-04-17 17:42 11MFull MSA before JPred filters in FASTA
[TXT]jp_v1B88_y.full_MSA.fasta.noGaps.html2015-04-17 17:43 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_v1B88_y.full_MSA.fasta.withGaps.html2015-04-17 17:43 23MFull MSA before JPred filters in FASTA
[ ]jp_v1B88_y.hmm2015-04-17 17:43 23KHHMer2 profile of the alignment
[TXT]jp_v1B88_y.html2015-04-17 17:43 257KHTML prediction and alignment data
[ ]jp_v1B88_y.input2015-04-17 16:49 131 Raw input data for analysis
[ ]jp_v1B88_y.jalview2015-04-17 17:43 3.1KJalview annotation file for alignment
[ ]jp_v1B88_y.jnet2015-04-17 17:43 4.6KJnet secondary structure output
[TXT]jp_v1B88_y.profile2015-04-17 17:41 20KPSIBLAST profile from alignment
[ ]jp_v1B88_y.pssm2015-04-17 17:43 27KPSIBLAST PSSM for Jnet
[TXT]jp_v1B88_y.results.html2016-02-15 12:18 53KJPred results page
[TXT]jp_v1B88_y.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_v1B88_y.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_v1B88_y.seq2015-04-17 16:49 138 Sequence data file
[TXT]jp_v1B88_y.simple.html2015-04-17 17:43 1.1KBrief HTML: sequence and prediction only
[TXT]jp_v1B88_y.svg.html2015-04-17 17:43 45KJalview SVG summary of results
[ ]jp_v1B88_y.tar.gz2015-04-17 17:43 6.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.